Publications

Journal Publications

2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1992

2023

  1. Safakish A, Sannachi L, DiCenzo D, Kolios C, Pejović-Milić A, Czarnota GJ. Predicting head and neck cancer treatment outcomes with pre-treatment quantitative ultrasound texture features and optimising machine learning classifiers with texture-of-texture features. Front Oncol. 2023 Oct 2;13:1258970.PMID: 3784980.
  2. Dasgupta A, Saifuddin M, McNabb E, Ho L, Lu L, Vesprini D, Karam I, Soliman H, Chow E, Gandhi S, Trudeau M, Tran W, Curpen B, Stanisz G, Sahgal A, Kolios M, Czarnota GJ. Novel MRI-guided focussed ultrasound stimulated microbubble radiation enhancement treatment for breast cancer. Sci Rep. 2023 Aug 21;13(1):13566. PMID: 37604988.
  3. Sharma D, Xuan Leong K, Palhares D, Czarnota GJ. Radiation combined with ultrasound and microbubbles: A potential novel strategy for cancer treatment. Z Med Phys. 2023 Aug;33(3):407-426. PMID: 37586962.
  4. Kheirkhah N, Kornecki A, Czarnota GJ, Samani A, Sadeghi-Naini A. Enhanced full-inversion-based ultrasound elastography for evaluating tumor response to neoadjuvant chemotherapy in patients with locally advanced breast cancer. Phys Med. 2023 Aug;112:102619. PMID: 37343438.
  5. Sharma D, McNabb E, Law N, Cumal A, Czarnota GJ. Ultrasound-stimulated microbubbles enhancement of fractionated radiation for tumor treatment. BMC Cancer. 2023 Jul 24;23(1):693. PMID: 37488490.
  6. Leong KX, Yang W, Sharma D, Liu S, Czarnota GJ. Ultrasound-stimulated microbubbles enhanced vascular disruption in fractionated radiotherapy-treated tumours via ASMase activation. Dis Model Mech. 2023 Jun 1;16(6):dmm049531. PMID: 37278613.
  7. Jalalifar A, Soliman H, Sahgal A, Sadeghi-Naini A. Automatic assessment of stereotactic radiation therapy outcome in brain metastasis using longitudinal tumour segmentation on serial MRI. IEEE J. Biomed Health Inform. 2023 Jun;27(6):2681-2692. PMID: 37018589.
  8. Sharma D, Tarapacki CM, Kandavel H, Panchalingam M, Kim HC, Cartar H, Kaffas AE, Czarnota GJ. Evaluating the effects of radiation and acoustically-stimulated microbubble therapy in an in vivo breast cancer model. PLoS One. 2023 May 2;18(5):e0277759. PMID: 37130114.
  9. Kheirkhah N, Dempsey S, Sadeghi-Naini A, Samani A. A novel tissue mechanics-based method for improving tissue displacement and strain estimation in ultrasound elastography. Med Phy. 2023 Apr;50(4): 2176-2194. PMID: 36398744.
  10. McNabb E, Sharma D, Sannachi L, Giles A, Yang W, Czarnota GJ. MR-guided ultrasound-stimulated microbubble therapy enhances radiation-induced tumor response. Sci Rep. 2023 Mar 18;13(1):4487. PMID: 36934140.
  11. Ferre R, Elst J, Senthilnathan S, Lagree A, Tabbarah A, Lu FI, Sadeghi-Naini A, Tran WT, Curpen B. Machine learning analysis of breast ultrasound to classify triple negative and HER2+ breast cancer subtypes. Breast Dis. 2023 Mar;42(1):59-66.
  12. Sharma D, Carter H, Sannachi L, Cui W, Giles A, Saifuddin M, Czarnota GJ. Quantitative Ultrasound for Evaluation of Tumour Response to Ultrasound-Microbubbles and Hyperthermia. Technol Cancer Res Treat. 2023 Jan-Dec;22:15330338231200993. PMID: 37750232.
  13. Leong KX, Sharma D, Czarnota GJ. Focused Ultrasound and Ultrasound Stimulated Microbubbles in Radiotherapy Enhancement for Cancer Treatment. Technol Cancer Res Treat. 2023 Jan-Dec;22:15330338231176376 PMID: 37192751.
  14. Sannachi L, Osapoetra LO, DiCenzo D, Halstead S, Wright F, Look-Hong N, Slodkowska E, Gandhi S, Curpen B, Kolios MC, Oelze M, Czarnota GJ. A priori prediction of breast cancer response to neoadjuvant chemotherapy using quantitative ultrasound, texture derivative and molecular subtype. Sci Rep. 2023 Dec 19;13(1):22687. PMID: 38114526.
  15. Sannachi L, Osapoetra LO, DiCenzo D, Halstead S, Wright F, Look-Hong N, Slodkowska E, Gandhi S, Curpen B, Kolios MC, Oelze M, Czarnota GJ. A priori prediction of breast cancer response to neoadjuvant chemotherapy using quantitative ultrasound, texture derivative and molecular subtype. Sci Rep. 2023 Dec 19;13(1):22687. PMID: 38114526.
  16. Mehrabian H, Chan RW, Sahgal A, Chen H, Theriault A, Lam WW, Myrehaug S, Tseng CL, Husain Z, Detsky J, Soliman H, Stanisz GJ. Chemical Exchange Saturation Transfer (CEST) MRI for Differentiating Radiation Necrosis from Tumor Progression in Brain Metastases-Application in a Clinical Setting J Magn Reson Imaging. 2023 Jun;57(6):1713-1725. doi: 10.1002/jmri.28440. Epub 2022 Oct 11. PMID: 36219521.
  17. Jabehdar Maralani P, Chan RW, Lam WW, Oakden W, Oglesby R, Lau A, Mehrabian H, Heyn C, Chan AKM, Soliman H, Sahgal A, Stanisz GJ. Chemical Exchange Saturation Transfer MRI: What Neuro-Oncology Clinicians Need To Know. Technol Cancer Res Treat. 2023 online. PMID: 37872686.
  18. Saednia K, Tran WT, Sadeghi-Naini A. A hierarchical self-attention-guided deep learning framework to predict breast cancer response to chemotherapy using pre‑treatment tumor biopsies. Medical Physics. 2023; Dec;50(12): 7852-7864. PMID: 37403567
  19. Jalalifar A, Soliman H, Sahgal A, Sadeghi-Naini A. Automatic assessment of stereotactic radiation therapy outcome in brain metastasis using longitudinal tumour segmentation on serial MRI. 2023 Jun;27(6): 2681-2692. PMID: 37018589.
  20. Jalalifar A, Soliman A, Sahgal A, Sadeghi-Naini A. A self-attention-guided 3D deep residual network with big transfer to predict local failure in brain metastasis after radiotherapy using multi-channel MRI. IEEE Journal of Translational Engineering in Health and Medicine. 2023; 11: 13-22. PMID: 36478770.
  21. Pellow C, Sojarood AJ, Zhao X, Kolios MC, Exner AA, Goertz DE. Synchronous Intravital Imaging and Cavitation Monitoring of Antivascular Focused Ultrasound in Tumor Microvasculature Using Monodisperse Low Boiling Point Nanodroplets. ACS Nano 2024, 18, 1, 410–427. PMID: 38147452

2022

  1. Bhardwaj, D.; Dasgupta, A.; DiCenzo, D.; Brade, S.; Fatima, K.; Quiaoit, K.; Trudeau, M.; Gandhi, S.; Eisen, A.; Wright, F.; Look-Hong, N.; Curpen, B.; Sannachi, L.; Czarnota, G.J. Early Changes in Quantitative Ultrasound Imaging Parameters during Neoadjuvant Chemotherapy to Predict Recurrence in Patients with Locally Advanced Breast Cancer Cancers 2022, 14, 1247. https://doi.org/10.3390/cancers14051247
  2. Geraghty BJ, Dasgupta A, Sandhu M, Malik N, Maralani PJ, Detsky J, Tseng CL, Soliman H, Myrehaug S, Husain Z, Perry J, Lau A, Sahgal A, Czarnota GJ. Predicting survival in patients with glioblastoma using MRI radiomic features extracted from radiation planning volumes J Neurooncol. 2022 Jan 3. doi: 10.1007/s11060-021-03939-9. Epub ahead of print. PMID: 34981301.
  3. Sharma D, Cartar H, Quiaoit K, Law N, Giles A, Czarnota GJ. Application of Ultrasound Combined with Microbubbles for Effect of Ultrasound-Stimulated Microbubbles and Hyperthermia on Tumor Vasculature of Breast Cancer Xenograft J Ultrasound Med. 2022 Feb 10. PMID: 35142383
  4. Wang Y, Abenojar EC, Wang J, de Leon AC, Tavri S, Wang X, Gopalakrishnan R, Walker E, MacLennan GT, Giles A, Czarnota GJ, Basilion JP, Exner AA. Development Of A Novel Castration-Resistant Orthotopic Prostate Cancer Model In New Zealand White Rabbit Prostate. 2022 May;82(6):695-705. doi: 10.1002/pros.24314. Epub 2022 Feb 15. PMID: 35167141
  5. Sharma D, Leong KX, Czarnota GJ. Application of Ultrasound Combined with Microbubbles for Cancer Therapy Int J Mol Sci. 2022 Apr 15;23(8):4393.PMID: 35457210
  6. Taleghamar H, Jalalifar SA, Czarnota GJ, Sadeghi-Naini A. Deep learning of quantitative ultrasound multi-parametric images at pre-treatment to predict breast cancer response to chemotherapy Sci Rep. 2022 Feb 10;12(1):2244. PMID: 35145158
  7. Sharma D, Czarnota GJ. Involvement of ceramide signaling in radiation-induced tumour vascular effects and vascular-targeted therapy. Int J Mol Sci. 2022 June. 23(12):6671. Doi: 10.3390/ikms23126671. PMID: 35743121.
  8. Mehrabian H, Chan RW, Sahgal A, Chen H, Theriault A, Lam WW, Myrehaug S, Tseng CL, Husain Z, Detsky J, Soliman H, Stanisz GJ.Mehrabian H, et al. Chemical Exchange Saturation Transfer MRI for Differentiating Radiation Necrosis From Tumor Progression in Brain Metastasis-Application in a Clinical Setting.  J Magn Reson Imaging. 2022 Oct 11. doi: 10.1002/jmri.28440. Online ahead of print.J Magn Reson Imaging. 2022. PMID: 36219521
  9. Saednia K, Lagree A, Alera MA, Fleshner L, Shiner A, Law E, Law B, Dodington DW, Lu FI, Tran WT, Sadeghi-Naini A.Saednia K, et al. Quantitative digital histopathology and machine learning to predict pathological complete response to chemotherapy in breast cancer patients using pre-treatment tumor biopsies. Sci Rep. 2022 Jun 11;12(1):9690. doi: 10.1038/s41598-022-13917-4.
  10. Jalalifar SA, Soliman H, Sahgal A, Sadeghi-Naini A. A Self-Attention-Guided 3D Deep Residual Network With Big Transfer to Predict Local Failure in Brain Metastasis After Radiotherapy Using Multi-Channel MRI IEEE Journal of Translational Engineering in Health and Medicine. 2022 Nov 4;11:13-22. doi: 10.1109/JTEHM.2022.3219625. 2022; 11: 13-22. PMID: 36478770
  11. Jalalifar SA, Soliman H, Sahgal A, Sadeghi-Naini A. A. Predicting the outcome of radiotherapy in brain metastasis by integrating the clinical and MRI-based deep learning features. Medical Physics. 2022; 49(11): 7167-7178. PMID: 35727568
  12.  Jalalifar, H. Soliman, A. Sahgal, A. Sadeghi-Naini. Impact of tumour segmentation accuracy on efficacy of quantitative MRI biomarkers of radiotherapy outcome in brain metastasis. Cancers. 2022; 14(20): 5133. PMID: 36291917
  13. Saednia K, Tran WT, Sadeghi-Naini A .A cascaded deep learning framework for segmentation of nuclei in digital histology images. 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). July 2022; Glasgow, Scotland, UK. pp. 4764-4767. PMID: 36086360
  14. Tseng CL, Chen H, Stewart J, Lau AZ, Chan RW, Lawrence LSP, Myrehaug S, Soliman H, Detsky J, Lim-Fat MJ, Lipsman N, Das S, Heyn C, Maralani PJ, Binda S, Perry J, Keller B, Stanisz GJ, Ruschin M, Sahgal A. High grade glioma radiation therapy on a high field 1.5 Tesla MR-Linac – workflow and initial experience with daily adapt-to-position (ATP) MR guidance: A first report. Front Oncol. 2022 Nov 28;12:1060098. doi: 10.3389/fonc.2022.1060098. eCollection 2022. PMID: 36518316.
  15. Oglesby RT, Lam WW, Ruschin M, Holden L, Sarfehnia A, Yeboah C, Sahgal A, Soliman H, Detsky J, Tseng CL, Myrehaug S, Husain Z, Lau AZ, Stanisz GJ, Chugh BP. Skull Phantom-Based Methodology to Validate MRI Co-Registration Accuracy for Gamma Knife Radiosurgery. Med Phys. 2022 Nov;49(11):7071-7084. doi: 10.1002/mp.15851. Epub 2022 Jul 26.
  16. Sharma D, Osapoetra LO, Czarnota GJ. Implementation of Non-Invasive Quantitative Ultrasound in Clinical Cancer Imaging. Cancers (Basel). 2022 Dec 16;14(24):6217. doi: 10.3390/cancers14246217. PMID: 36551702; PMCID: PMC9776858.
  17. Sharma D, Cartar H, Quiaoit K, Law N, Giles A, Czarnota GJ. Effect of Ultrasound-Stimulated Microbubbles and Hyperthermia on Tumor Vasculature of Breast Cancer Xenograft J Ultrasound Med. 2022 Nov;41(11):2659-2671. PMID: 35142383.
  18. Jalalifar A, Soliman H, Sahgal A, Sadeghi-Naini A. A self-attention-guided 3D deep residual network with big transfer to predict local failure in brain metastasis after radiotherapy using multi-channel MRI. IEEE J Transl Eng Health Med. 2022 Nov 4:11: 13-22. PMID: 36478770.
  19. Jalalifar A, Soliman H, Sahgal A, Sadeghi-Naini A. A. Predicting the outcome of radiotherapy in brain metastasis by integrating the clinical and MRI-based deep learning features. Med Phys. 2022 Nov;49(11): 7167-7178. PMID 35727568.
  20. Jalalifar A, Soliman H, Sahgal A, Sadeghi-Naini A. Impact of tumour segmentation accuracy on efficacy of quantitative MRI biomarkers of radiotherapy outcome in brain metastasis. Cancers (Basel). 2022 Oct 20;14(20): 5133. PMID 36297917.
  21. Gaebe K, Li AY, Park A, Parmar A, Lok BH, Sahgal A, Chan KKW, Erickson AW, Das S. Stereotactic radiosurgery versus whole brain radiotherapy in patients with intracranial metastatic disease and small-cell lung cancer: a systematic review and meta-analysis. Lancet Oncol. 2022 Jul;23(7):931-939. doi: 10.1016/S1470-2045(22)00271-6. Epub 2022 May 26. PMID: 35644163.
  22. Tan H, Stewart J, Ruschin M, Wang MH, Myrehaug S, Tseng CL, Detsky J, Husain Z, Chen H, Sahgal A, Soliman H. Inter-fraction dynamics during post-operative 5 fraction cavity hypofractionated stereotactic radiotherapy with a MR LINAC: a prospective serial imaging study. J Neurooncol. 2022 Feb;156(3):569-577. doi: 10.1007/s11060-021-03938-w. Epub 2022 Jan 3. PMID: 34981300.
  23. Tseng CL, Chen H, Stewart J, Lau AZ, Chan RW, Lawrence LSP, Myrehaug S, Soliman H, Detsky J, Lim-Fat MJ, Lipsman N, Das S, Heyn C, Maralani PJ, Binda S, Perry J, Keller B, Stanisz GJ, Ruschin M, Sahgal A. High grade glioma radiation therapy on a high field 1.5 Tesla MR-Linac – workflow and initial experience with daily adapt-to-position (ATP) MR guidance: A first report. Front Oncol. 2022 Nov 28;12:1060098. doi: 10.3389/fonc.2022.1060098. PMID: 36518316; PMCID: PMC9742425.
  24. Wang MH, Kim A, Ruschin M, Tan H, Soliman H, Myrehaug S, Detsky J, Husain Z, Atenafu EG, Keller B, Sahgal A, Tseng CL. Comparison of Prospectively Generated Glioma Treatment Plans Clinically Delivered on Magnetic Resonance Imaging (MRI)-Linear Accelerator (MR-Linac) Versus Conventional Linac: Predicted and Measured Skin Dose. Technol Cancer Res Treat. 2022 Jan-Dec;21:15330338221124695. doi: 10.1177/15330338221124695. PMID: 36071647; PMCID: PMC9459463.
  25. Versteeg AL, Elkaim LM, Sahgal A, Rhines LD, Sciubba DM, Schuster JM, Fehlings MG, Lazary A, Clarke MJ, Arnold PM, Bettegowda C, Boriani S, Gokaslan ZL, Fisher CG, Weber MH; AO Spine Knowledge Forum Tumor. Steroids in the Management of Preoperative Neurological Deficits in Metastatic Spine Disease: Results From the EPOSO Study. Neurospine. 2022 Mar;19(1):43-50. doi: 10.14245/ns.2142768.384. Epub 2022 Jan 30. PMID: 35130426; PMCID: PMC8987562.

2021

  1. Dasgupta A, Bhardwaj D, DiCenzo D, Fatima K, Osapoetra LO, Quiaoit K, Saifuddin M, Brade S, Trudeau M, Gandhi S, Eisen A, Wright F, Look-Hong N, Sadeghi-Naini A, Curpen B, Kolios MC, Sannachi L, Czarnota GJ. Radiomics in predicting recurrence for patients with locally advanced breast cancer using quantitative ultrasound. Oncotarget. 2021 Dec 7;12(25):2437-2448. doi: 10.18632/oncotarget.28139. PMID: 34917262; PMCID: PMC8664392.
  2. Jaberipour M, Soliman H, Sahgal A, Sadeghi-Naini A.Jaberipour M, et al A priori prediction of local failure in brain metastasis after hypo-fractionated stereotactic radiotherapy using quantitative MRI and machine learning. Sci Rep. 2021 Nov 3;11(1):21620. doi: 10.1038/s41598-021-01024-9.Sci Rep. 2021. PMID: 34732781
  3. Malik N, Geraghty B, Dasgupta A, Maralani PJ, Sandhu M, Detsky J, Tseng CL, Soliman H, Myrehaug S, Husain Z, Perry J, Lau A, Sahgal A, Czarnota GJ. MRI radiomics to differentiate between low grade glioma and glioblastoma peritumoral region. J Neurooncol. 2021 Nov;155(2):181-191. doi: 10.1007/s11060-021-03866-9. Epub 2021 Oct 25. PMID: 34694564.
  4. Sharma D, Osapoetra LO, Faltyn M, Giles A, Stanisz M, Czarnota GJ. In vivo assessment of prostate cancer response using quantitative ultrasound characterization of ultrasonic scattering properties. BMC Cancer. 2021 Sep 3;21(1):991. doi: 10.1186/s12885-021-08706-7. PMID: 34479484; PMCID: PMC8417963.
  5. Lagree A, Shiner A, Alera MA, Fleshner L, Law E, Law B, Lu FI, Dodington D, Gandhi S, Slodkowska EA, Shenfield A, Jerzak KJ, Sadeghi-Naini A, Tran WT. Assessment of Digital Pathology Imaging Biomarkers Associated with Breast Cancer Histologic Grade Curr Oncol. 2021 Oct 27;28(6):4298-4316. PMID: 34898544
  6. Sharma D, Osapoetra LO, Faltyn M, Do NNA, Giles A, Stanisz M, Sannachi L, Czarnota GJ. Quantitative ultrasound characterization of therapy response in prostate cancer in vivo.Am J Transl Res. 2021 May 15;13(5):4437-4449. PMID: 34150025; PMCID: PMC8205668.
  7. Dasgupta A, Geraghty B, Maralani PJ, Malik N, Sandhu M, Detsky J, Tseng CL, Soliman H, Myrehaug S, Husain Z, Perry J, Lau A, Sahgal A, Czarnota GJ. Quantitative mapping of individual voxels in the peritumoral region of IDH-wildtype glioblastoma to distinguish between tumor infiltration and edema.J Neurooncol. 2021 Jun;153(2):251-261. doi: 10.1007/s11060-021-03762-2. Epub 2021 Apr 27. PMID: 33905055.
  8. Fatima K, Dasgupta A, DiCenzo D, Kolios C, Quiaoit K, Saifuddin M, Sandhu M, Bhardwaj D, Karam I, Poon I, Husain Z, Sannachi L, Czarnota GJ. Ultrasound delta-radiomics during radiotherapy to predict recurrence in patients with head and neck squamous cell carcinoma. Clin Transl Radiat Oncol. 2021 Mar 12;28:62-70. doi: 10.1016/j.ctro.2021.03.002. PMID: 33778174; PMCID: PMC7985224.
  9. Osapoetra LO, Dasgupta A, DiCenzo D, Fatima K, Quiaoit K, Saifuddin M, Karam I, Poon I, Husain Z, Tran WT, Sannachi L, Czarnota GJ.  Assessment of clinical radiosensitivity in patients with head-neck squamous cell carcinoma from pre-treatment quantitative ultrasound radiomics.Sci Rep. 2021 Mar 17;11(1):6117. doi: 10.1038/s41598-021-85221-6. PMID: 33731738; PMCID: PMC7969626.
  10. Osapoetra LO, Sannachi L, Quiaoit K, Dasgupta A, DiCenzo D, Fatima K, Wright F, Dinniwell R, Trudeau M, Gandhi S, Tran W, Kolios MC, Yang W, Czarnota GJ. A priori prediction of response in multicentre locally advanced breast cancer (LABC) patients using quantitative ultrasound and derivative texture methods. Oncotarget. 2021 Jan 19;12(2):81-94. doi: 10.18632/oncotarget.27867. PMID: 33520113; PMCID: PMC7825636.
  11. Moghadas-Dastjerdi H, Rahman SH, Sannachi L, Wright FC, Gandhi S, Trudeau ME, Sadeghi-Naini A, Czarnota GJ. Prediction of chemotherapy response in breast cancer patients at pre-treatment using second derivative texture of CT images and machine learning. Transl Oncol. 2021 Oct;14(10):101183. doi: 10.1016/j.tranon.2021.101183. Epub 2021 Jul 19. PMID: 34293685; PMCID: PMC8319580.
  12. Taleghamar H, Moghadas-Dastjerdi H, Czarnota GJ, Sadeghi-Naini A. Characterizing intra-tumor regions on quantitative ultrasound parametric images to predict breast cancer response to chemotherapy at pre-treatment. Sci Rep. 2021 Jul 21;11(1):14865. doi: 10.1038/s41598-021-94004-y. PMID: 34290259; PMCID: PMC8295369.
  13. Kolios C, Sannachi L, Dasgupta A, Suraweera H, DiCenzo D, Stanisz G, Sahgal A, Wright F, Look-Hong N, Curpen B, Sadeghi-Naini A, Trudeau M, Gandhi S, Kolios MC, Czarnota GJ. MRI texture features from tumor core and margin in the prediction of response to neoadjuvant chemotherapy in patients with locally advanced breast cancer. Oncotarget. 2021 Jul 6;12(14):1354-1365. doi: 10.18632/oncotarget.28002. PMID: 34262646; PMCID: PMC8274727.
  14. Tan JL, Djayakarsana D, Wang H, Chan RW, Bailey C, Lau AZ. Deuterium MRS of early treatment-induced changes in tumour lactate in vitro. NMR Biomed. 2021 Aug 18:e4599. doi: 10.1002/nbm.4599. Epub ahead of print. PMID: 34405471.
  15. Pellow C, Cherin E, Abenojar EC, Exner AA, Zheng G, Demore CEM, Goertz DE. High-Frequency Array-Based Nanobubble Nonlinear Imaging in a Phantom and In Vivo. IEEE Trans Ultrason Ferroelectr Freq Control. 2021 Jun;68(6):2059-2074. doi: 10.1109/TUFFC.2021.3055141. Epub 2021 May 25. PMID: 33513102; PMCID: PMC8296974.
  16. Pellow C, Tan J, Chérin E, Demore CEM, Zheng G, Goertz DE. High frequency ultrasound nonlinear scattering from porphyrin nanobubbles. Ultrasonics. 2021 Feb;110:106245. doi: 10.1016/j.ultras.2020.106245. Epub 2020 Sep 6. PMID: 32932144.
  17. Adams C, Jones RM, Yang SD, Kan WM, Leung K, Zhou Y, Lee KU, Huang Y, Hynynen K. Implementation of a Skull-Conformal Phased Array for Transcranial Focused Ultrasound Therapy. IEEE Trans Biomed Eng. 2021 May 5;PP. doi: 10.1109/TBME.2021.3077802.  PMID: 33950835.
  18. McMahon D, O’Reilly MA, Hynynen K. Therapeutic Agent Delivery Across the Blood-Brain Barrier Using Focused Ultrasound. Annu Rev Biomed Eng. 2021 Mar 22. doi: 10.1146/annurev-bioeng-062117-121238.  PMID: 33752471.
  19. Lea-Banks H, Meng Y, Wu SK, Belhadjhamida R, Hamani C, Hynynen K. Ultrasound-sensitive nanodroplets achieve targeted neuromodulation. J Control Release. 2021 Apr 10;332:30-39. doi: 10.1016/j.jconrel.2021.02.010. Epub 2021 Feb 16. PMID: 33600879; PMCID: PMC8089063.
  20. Weber-Adrian D, Kofoed RH, Silburt J, Noroozian Z, Shah K, Burgess A, Rideout S, Kügler S, Hynynen K, Aubert I. Systemic AAV6-synapsin-GFP administration results in lower liver biodistribution, compared to AAV1&2 and AAV9, with neuronal expression following ultrasound-mediated brain delivery. Sci Rep. 2021 Jan 21;11(1):1934. doi: 10.1038/s41598-021-81046-5. PMID: 33479314; PMCID: PMC7820310.
  21. Wan H, Brathwaite S, Ai J, Hynynen K, Macdonald RL. Role of perivascular and meningeal macrophages in outcome following experimental subarachnoid hemorrhage. J Cereb Blood Flow Metab. 2021 Jan 14:271678X20980296. doi: 10.1177/0271678X20980296.  PMID: 33444089.
  22. Poon C, Pellow C, Hynynen K. Neutrophil recruitment and leukocyte response following focused ultrasound and microbubble mediated blood-brain barrier treatments. Theranostics. 2021 Jan 1;11(4):1655-1671. doi: 10.7150/thno.52710. PMID: 33408773; PMCID: PMC7778596.
  23. Meti N, Sadeghi-Naini A, Tran WT. Reply to A. Pfob et al. JCO Clin Cancer Inform. 2021 Jun;5:656-657. doi: 10.1200/CCI.21.00059. PMID: 34110932.
  24. Lagree A, Mohebpour M, Meti N, Saednia K, Lu FI, Slodkowska E, Gandhi S, Rakovitch E, Shenfield A, Sadeghi-Naini A, Tran WT. A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks. Sci Rep. 2021 Apr 13;11(1):8025. doi: 10.1038/s41598-021-87496-1. PMID: 33850222; PMCID: PMC8044238.
  25. Meti N, Saednia K, Lagree A, Tabbarah S, Mohebpour M, Kiss A, Lu FI, Slodkowska E, Gandhi S, Jerzak KJ, Fleshner L, Law E, Sadeghi-Naini A, Tran WT. Machine Learning Frameworks to Predict Neoadjuvant Chemotherapy Response in Breast Cancer Using Clinical and Pathological Features. JCO Clin Cancer Inform. 2021 Jan;5:66-80. doi: 10.1200/CCI.20.00078. PMID: 33439725.
  26. Dodington DW, Lagree A, Tabbarah S, Mohebpour M, Sadeghi-Naini A, Tran WT, Lu FI. Analysis of tumor nuclear features using artificial intelligence to predict response to neoadjuvant chemotherapy in high-risk breast cancer patients. Breast Cancer Res Treat. 2021 Apr;186(2):379-389. doi: 10.1007/s10549-020-06093-4. Epub 2021 Jan 23. PMID: 33486639.
  27. Nguyen TK, Chin L, Sahgal A, Dagan R, Eppinga W, Guckenberger M, Kim JH, Lo SS, Redmond KJ, Siva S, Stish BJ, Chan R, Lawrence L, Lau A, Tseng CL. International Multi-institutional Patterns of Contouring Practice and Clinical Target Volume Recommendations for Stereotactic Body Radiotherapy for Non-Spine Bone Metastases.  Int J Radiat Oncol Biol Phys. 2021 Sep 9:S0360-3016(21)02785-1. doi: 10.1016/j.ijrobp.2021.09.004. PMID: 34509549.
  28. Lau AZ, Chen AP, Cunningham CH. Cardiac metabolic imaging using hyperpolarized [1-13 C]lactate as a substrate. NMR Biomed. 2021 Jul;34(7):e4532. doi: 10.1002/nbm.4532. Epub 2021 May 8. PMID: 33963784.
  29. Lawrence LSP, Chin LCL, Chan RW, Nguyen TK, Sahgal A, Tseng CL, Lau AZ. Method of computing direction-dependent margins for the development of consensus contouring guidelines. Radiat Oncol. 2021 Apr 13;16(1):71. doi: 10.1186/s13014-021-01799-1. PMID: 33849576; PMCID: PMC8045331
  30. Chan RW, Lawrence LSP, Oglesby RT, Chen H, Stewart J, Theriault A, Campbell M, Ruschin M, Myrehaug S, Atenafu EG, Keller B, Chugh B, MacKenzie S, Tseng CL, Detsky J, Maralani PJ, Czarnota GJ, Stanisz GJ, Sahgal A, Lau AZ. Chemical exchange saturation transfer MRI in central nervous system tumours on a 1.5 T MR-Linac. Radiother Oncol. 2021 Jul 17;162:140-149. doi: 10.1016/j.radonc.2021.07.010. PMID: 34280403.
  31. Maralani PJ, Myrehaug S, Mehrabian H, Chan AKM, Winermark M, Heyn C, Conklin J, Ellingson BM, Rahimi S, Lau AZ, Tseng C, Soliman H, Detsky J, Daghighi S, Keith J, Munoz DG, Das S, Eshetu AG, Lipsman N, Perry J, STANISZ GJ, Sahgal A. (2021). ADC, D, f dataset calculated through the simplified IVIM model, with MGMT promoter methylation, age, and ECOG, in 38 patients with wildtype IDH glioblastoma. Data in Brief. 35: 106950.
  32. Jabehdar Maralani P , Myrehaug S , Mehrabian H , Chan AKM , Wintermark M , Heyn C , Conklin J ,Ellingson BM , Rahimi S , Lau AZ , Tseng CL , Soliman H , Detsky J , Daghighi S , Keith J , Munoz DG , Das S , Atenafu EG , Lipsman N , Perry J , Stanisz G , Sahgal A. (2021). Intravoxel incoherent motion (IVIM) modeling of diffusion MRI during chemoradiation predicts therapeutic response in IDH wildtype glioblastoma.Radiotherapy and oncology Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology. 156: 258-265.
  33. Kolios C, Lakshmanan S, Dasgupta A, Suraweera H, DiCenzo D, STANISZ GJ, Sahgal A, Wright F, Look Hong N, Curpen B, Trudeau M, Gandhi S, Kolios M, Czarnota G. (2021). MRI texture features from tumor core and margin in the predictionof response to neoadjuvant chemotherapy in patients with locally advanced breast cancer. Oncotarget. 12(14): 1354-1365.
  34. Stewart J , Sahgal A , Lee Y , Soliman H , Tseng CL , Detsky J , Husain Z , Ho L , Das S , Maralani PJ , Lipsman N , Stanisz G , Perry J , Chen H , Atenafu EG , Campbell M , Lau AZ , Ruschin M , Myrehaug S. (2021). Quantitating Inter-fraction Target Dynamics during Concurrent Chemoradiation for Glioblastoma: A Prospective Serial Imaging Study. International journal of radiation oncology, biology, physics. 109(3): 736-746.
  35. Chan RW , Chen H , Myrehaug S , Atenafu EG , Stanisz GJ , Stewart J , Maralani PJ , Chan AKM , Daghighi S , Ruschin M , Das S , Perry J , Czarnota GJ , Sahgal A , Lau AZ. (2021). Quantitative CEST and MT at 1.5T for monitoring treatment response in glioblastoma: early and late tumor progression during chemoradiation. Journal of neuro-oncology. 151(2): 267-278.
  36. Wang Y, Fadhel MN, Hysi E, Pastenak M, Sathiyamoorthy K, Kolios MC. In vivo spectroscopic photoacoustic imaging and laser-induced nanoparticle vaporization for anti-HER2 breast cancer.
    J Biophotonics. 2021 Jul 9:e202100099. doi: 10.1002/jbio.202100099.  PMID: 34241969
  37. Wang Y, Pasternak M, Sathiyamoorthy K, Kolios MC. Anti-HER2 PLGA-PEG polymer nanoparticle containing gold nanorods and paclitaxel for laser-activated breast cancer detection and therapy. Biomed Opt Express. 2021 Mar 18;12(4):2171-2185. doi: 10.1364/BOE.419252. eCollection 2021 Apr 1. PMID: 33996222
  38. Fernandes DA, Fernandes DD, Malik A, Gomes GW, Appak-Baskoy S, Berndl E, Gradinaru CC, Kolios MC. J Multifunctional nanoparticles as theranostic agents for therapy and imaging of breast cancer. Photochem Photobiol B. 2021 May;218:112110. doi:10.1016/j.jphotobiol.2020.112110. Epub 2020 Dec 29. PMID: 33865007
  39. Xu J, Salari A, Wang Y, He X, Kerr L, Darbandi A, de Leon AC, Exner AA, Kolios MC, Yuen D, Tsai SSH. Small. Microfluidic Generation of Monodisperse Nanobubbles by Selective Gas Dissolution. 2021 Apr 2:e2100345. doi: 10.1002/smll.202100345.  PMID: 33811441
  40. Salari A, Appak-Baskoy S, Coe IR, Abousawan J, Antonescu CN, Tsai SSH, Kolios MC. Dosage-controlled intracellular delivery mediated by acoustofluidics for lab on a chip applications.
    2021 May 4;21(9):1788-1797. doi: 10.1039/d0lc01303j. PMID: 33734246
  41. Sojahrood AJ, Haghi H, Shirazi NR, Karshafian R, Kolios MC. On the threshold of 1/2 order subharmonic emissions in the oscillations of ultrasonically excited bubbles. Ultrasonics. 2021 Apr;112:106363. doi: 10.1016/j.ultras.2021.106363. Epub 2021 Jan 20. PMID: 33508558
  42. Sojahrood AJ, Haghi H, Karshafian R, Kolios MC. Nonlinear dynamics and bifurcation structure of ultrasonically excited lipid coated microbubbles.Ultrason Sonochem. 2021 Apr;72:105405. doi: 10.1016/j.ultsonch.2020.105405. Epub 2020 Dec 8. PMID: 33360533
  43. Assi H, Yang C, Shaswary E, Tam M, Tavakkoli J, Kolios M, Peyman G, Kumaradas C. Real-Time Control of Nanoparticle-Mediated Thermal Therapy Using Photoacoustic Imaging.
    IEEE Trans Biomed Eng. 2021 Jul;68(7):2188-2194. doi: 10.1109/TBME.2020.3037991. Epub 2021 Jun 17. PMID: 33186098
  44. O’Reilly MA, Hynynen K. The mechanical potential of ultrasound on nervous tissue. J Acoust Soc Am. 2021 Jun;149(6):R11. doi: 10.1121/10.0005066.
  45. Fletcher S-MP, Choi M, Ramesh R, O’Reilly MA. Focused Ultrasound-Induced Blood-Spinal Cord Barrier Opening using Short-Burst Phase Keying Exposures in Rats: A Parameter Study. Ultrasound in Medicine & Biology. 2021 Jul;47(7):1747-1760. doi: 10.1016/j.ultrasmedbio.2021.03.007.
  46. McMahon D, O’Reilly MA, Hynynen K. Therapeutic Agent Delivery Across the Blood-Brain Barrier Using Focused Ultrasound. Annual Review of Biomedical Engineering. 2021 Jul 13;23:89-113. doi: 10.1146/annurev-bioeng-062117-121238. Epub 2021 Mar 22.
  47. Smith, P, Ogronik N, Satkunarajah J, O’Reilly MA. Characterization of Ultrasound-Mediated Delivery of Trastuzumab to Normal and Pathologic Spinal Cord Tissue. Scientific Reports. 2021. Feb 24;11(1):4412. doi: 10.1038/s41598-021-83874-xFactor: 3.998
  48. Lynch M, Heinen S, Markham-Coultes K, O’Reilly M, Van Slyke P, Dumont DJ, Hynynen K, Aubert I. Vasculotide restores the blood-brain barrier after focused ultrasound-induced permeability in a mouse model of Alzheimer’s disease. International Journal of Medical Sciences.

2020

  1. Osapoetra LO, Chan W, Tran W, Kolios MC, Czarnota GJ. Comparison of methods for texture analysis of QUS parametric images in the characterization of breast lesions. PLoS One. 2020 Dec 31;15(12):e0244965. doi: 10.1371/journal.pone.0244965. PMID: 33382837; PMCID: PMC7775053.
  2. Moghadas-Dastjerdi H, Sha-E-Tallat HR, Sannachi L, Sadeghi-Naini A, Czarnota GJ. A priori prediction of tumour response to neroadjuvant chemotherapy in breat cancer patients using quantitative CT and machine learning Sci Rep. 2020 Jul 2;10(1):10936. doi: 10.1038/s41598-020-67823-8.PMID: 32616912
  3. Dasgupta A, Fatima K, DiCenzo D, Bhardwaj D, Quiaoit K, Saifuddin M, Karam I, Poon I, Husain Z, Tran WT, Sannachi L, Czarnota GJ. Quantitative ultrasound radiomics in predicting recurrence for patients with node-positive head-neck squamous cell carcinoma treated with radical radiotherapy. Cancer Med. 2021 Apr;10(8):2579-2589. doi: 10.1002/cam4.3634. Epub 2020 Dec 13. PMID: 33314716; PMCID: PMC8026932.
  4. Tran WT, Suraweera H, Quiaoit K, DiCenzo D, Fatima K, Jang D, Bhardwaj D, Kolios C, Karam I, Poon I, Sannachi L, Gangeh M, Sadeghi-Naini A, Dasgupta A, Czarnota GJ. Quantitative ultrasound delta-radiomics during radiotherapy for monitoring treatment responses in head and neck malignancies. Future Sci OA. 2020 Sep 4;6(9):FSO624. doi: 10.2144/fsoa-2020-0073. PMID: 33235811; PMCID: PMC7668124.
  5. Chan RW, Chen H, Myrehaug S, Atenafu EG, Stanisz GJ, Stewart J, Maralani PJ, Chan AKM, Daghighi S, Ruschin M, Das S, Perry J, Czarnota GJ, Sahgal A, Lau AZ. Quantitative CEST and MT at 1.5T for monitoring treatment response in glioblastoma early and late tumor progression during chemoradiation. J Neurooncol. 2021 Jan;151(2):267-278. doi: 10.1007/s11060-020-03661-y. Epub 2020 Nov 16. PMID: 33196965.
  6. Dasgupta A, Brade S, Sannachi L, Quiaoit K, Fatima K, DiCenzo D, Osapoetra LO, Saifuddin M, Trudeau M, Gandhi S, Eisen A, Wright F, Look-Hong N, Sadeghi-Naini A, Tran WT, Curpen B, Czarnota GJ. Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer. Oncotarget. 2020 Oct 20;11(42):3782-3792. doi: 10.18632/oncotarget.27742. PMID: 33144919; PMCID: PMC7584238.
  7. Moghadas-Dastjerdi H, Sha-E-Tallat HR, Sannachi L, Osapoeta LO, Sadeghi-Naini A, Czarnota GJ. Machine Learning-Based A Priori Chemotherapy Response Prediction in Breast Cancer Patients using Textural CT Biomarkers Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:1250-1253. doi: 10.1109/EMBC44109.2020.9176099. PMID: 33018214.
  8. Dasgupta A, Sahgal A, Warner E, Czarnota GJ. Safety of palbociclib concurrent with palliative pelvic radiotherapy discussion of a case of increased toxicity and brief review of literature. J Med Radiat Sci. 2021 Mar;68(1):96-102. doi: 10.1002/jmrs.435. Epub 2020 Sep 28. PMID: 32985794; PMCID: PMC7890927.
  9. McNabb E, Al-Mahrouki A, Law N, McKay S, Tarapacki C, Hussein F, Czarnota GJ. Ultrasound-stimulated microbubble radiation enhancement of tumors Single-dose and fractionated treatment evaluation. PLoS One. 2020 Sep 25;15(9):e0239456. doi: 10.1371/journal.pone.0239456. PMID: 32976517; PMCID: PMC7518623.
  10. Sharma D, Cartar H, Law N, Giles A, Farhat G, Oelze M, Czarnota GJ. Optimization of microbubble enhancement of hyperthermia for cancer therapy in an in vivo breast tumour model. PLoS One. 2020 Aug 14;15(8):e0237372. doi: 10.1371/journal.pone.0237372. PMID: 32797049; PMCID: PMC7428078.
  11. Osapoetra LO, Sannachi L, DiCenzo D, Quiaoit K, Fatima K, Czarnota GJ. Breast lesion characterization using Quantitative Ultrasound (QUS) and derivative texture methods. Transl Oncol. 2020 Oct;13(10):100827. doi: 10.1016/j.tranon.2020.100827. Epub 2020 Jul 11. PMID: 32663657; PMCID: PMC7358267.
  12. DiCenzo D, Quiaoit K, Fatima K, Bhardwaj D, Sannachi L, Gangeh M, Sadeghi-Naini A, Dasgupta A, Kolios MC, Trudeau M, Gandhi S, Eisen A, Wright F, Look Hong N, Sahgal A, Stanisz G, Brezden C, Dinniwell R, Tran WT, Yang W, Curpen B, Czarnota GJ. Quantitative ultrasound radiomics in predicting response to neoadjuvant chemotherapy in patients with locally advanced breast cancer: Results from multi-institutional study. Cancer Med. 2020 Aug;9(16):5798-5806. doi: 10.1002/cam4.3255. Epub 2020 Jun 29. PMID: 32602222; PMCID: PMC7433820.
  13. Klein J, Tran W, Lai P, Al-Mahrouki A, Giles A, Czarnota GJ. Effect of Treatment Sequencing on the Tumor Response to Combined Treatment With Ultrasound-Stimulated Microbubbles and Radiotherapy. J Ultrasound Med. 2020 Dec;39(12):2415-2425. doi: 10.1002/jum.15363. Epub 2020 Jun 11. PMID: 32525248.
  14. Drost L, Hynynen K, Huang Y, Lucht B, Wong E, Czarnota G, Yee C, Wan BA,Ganesh V, Chow E, David E. Ultrasound-Guided Focused Ultrasound Treatment for Painful Bone Metastases: A Pilot Study. Ultrasound Med Biol. 2020 Jun;46(6):1455-1463. doi:10.1016/j.ultrasmedbio.2020.01.032. Epub 2020 Mar 4.PubMed PMID: 32146008.
  15. Sannachi L, Gangeh M, Naini AS, Bhargava P, Jain A, Tran WT, Czarnota GJ.
    Quantitative Ultrasound Monitoring of Breast Tumour Response to Neoadjuvant Chemotherapy: Comparison of Results Among Clinical Scanners. Ultrasound Med Biol.
    2020 May;46(5):1142-1157. doi: 10.1016/j.ultrasmedbio.2020.01.022. Epub 2020 Feb 25. PubMed PMID: 32111456.
  16. Helfield BL, Yoo K, Liu J, Williams R, Sheeran PS, Goertz DE, Burns PN.Investigating the Accumulation of Submicron Phase-Change Droplets in Tumors. Ultrasound Med Biol. 2020 Oct;46(10):2861-2870. doi: 10.1016/j.ultrasmedbio.2020.06.021. Epub 2020 Jul 27. PMID: 32732167.
  17. Pellow C, Abenojar EC, Exner AA, Zheng G, Goertz DE. Concurrent visual and acoustic tracking of passive and active delivery of nanobubbles to tumors. Theranostics. 2020 Sep 23;10(25):11690-11706. doi: 10.7150/thno.51316. PMID: 33052241; PMCID: PMC7545999.
  18. Santos MA, Wu SK, Regenold M, Allen C, Goertz DE, Hynynen K. Novel fractionated ultrashort thermal exposures with MRI-guided focused ultrasound for treating tumors with thermosensitive drugs. Sci Adv. 2020 Sep 2;6(36):eaba5684. doi: 10.1126/sciadv.aba5684. PMID: 32917589; PMCID: PMC7467687.
  19. Munding CE, Chérin E, Alves N, Goertz DE, Courtney BK, Foster FS. 30/80 MHz Bidirectional Dual-Frequency IVUS Feasibility Evaluated In Vivo and for Stent Imaging./80 MHz Bidirectional Dual-Frequency IVUS Feasibility Evaluated In Vivo and for Stent Imaging. Ultrasound Med Biol. 2020 Aug;46(8):2104-2112. doi: 10.1016/j.ultrasmedbio.2020.03.032. Epub 2020 May 27. PMID: 32473846.
  20. Pellow C, O’Reilly MA, Hynynen K, Zheng G, Goertz DE. Simultaneous Intravital Optical and Acoustic Monitoring of Ultrasound-Triggered Nanobubble Generation and Extravasation. Nano Lett. 2020 Jun 10;20(6):4512-4519. doi: 10.1021/acs.nanolett.0c01310. Epub 2020 May 8. PMID: 32374617.
  21. Lea-Banks H, O’Reilly MA, Hamani C, Hynynen K. Localized anesthesia of a specific brain region using ultrasound-responsive barbiturate nanodroplets. Theranostics. 2020 Feb 3;10(6):2849-2858. doi: 10.7150/thno.41566. eCollection 2020. PubMed PMID: 32194839; PubMed Central PMCID: PMC7052887.
  22. Kooiman K, Roovers S, Langeveld SAG, Kleven RT, Dewitte H, O’Reilly MA, Escoffre JM, Bouakaz A, Verweij MD, Hynynen K, Lentacker I, Stride E, Holland CK. Ultrasound-Responsive Cavitation Nuclei for Therapy and Drug Delivery. Ultrasound Med Biol. 2020 Jun;46(6):1296-1325. doi: 10.1016/j.ultrasmedbio.2020.01.002. Epub 2020 Mar 10. Review. PubMed PMID: 32165014.
  23. Christensen-Jeffries K, Couture O, Dayton PA, Eldar YC, Hynynen K, Kiessling F, O’Reilly M, Pinton GF, Schmitz G, Tang MX, Tanter M, van Sloun RJG. Super-resolution Ultrasound Imaging. Ultrasound Med Biol. 2020 Apr;46(4):865-891. doi: 10.1016/j.ultrasmedbio.2019.11.013. Epub 2020 Jan 21. Review. PubMed PMID: 31973952.
  24. Fletcher SP, Ogrodnik N, O’Reilly MA. Enhanced Detection of Bubble Emissions Through the Intact Spine for Monitoring Ultrasound-Mediated Blood-Spinal Cord Barrier Opening. IEEE Trans Biomed Eng. 2020 May;67(5):1387-1396. doi: 10.1109/TBME.2019.2936972. Epub 2019 Aug 22. PubMed PMID: 31442968.
  25. Wu SK, Tsai CL, Huang Y, Hynynen K. Focused Ultrasound and Microbubbles-Mediated Drug Delivery to Brain Tumor. Pharmaceutics. Pharmaceutics. 2020 Dec 24;13(1):15. doi: 10.3390/pharmaceutics13010015. PMID: 33374205; PMCID: PMC7823947.
  26. Meng Y, Jones RM, Davidson B, Huang Y, Pople CB, Surendrakumar S, Hamani C, Hynynen K, Lipsman N. Technical Principles and Clinical Workflow of Transcranial MR-Guided Focused Ultrasound. Stereotact Funct Neurosurg. 2020 Dec 10:1-14. doi: 10.1159/000512111. PMID: 33302282.
  27. McMahon D, Lassus A, Gaud E, Jeannot V, Hynynen K. Microbubble formulation influences inflammatory response to focused ultrasound exposure in the brain. Sci Rep. 2020 Dec 9;10(1):21534. doi: 10.1038/s41598-020-78657-9. PMID: 33299094; PMCID: PMC7725832.
  28. McMahon D, Deng L, Hynynen K. Comparing rapid short-pulse to tone burst sonication sequences for focused ultrasound and microbubble-mediated blood-brain barrier permeability enhancement.  J Control Release. 2021 Jan 10;329:696-705. doi: 10.1016/j.jconrel.2020.10.004. Epub 2020 Oct 3. PMID: 33022327.’
  29. Rahimi S, Jones RM, Hynynen K. A High-Frequency Phased Array System for Transcranial Ultrasound Delivery in Small Animals. IEEE Trans Ultrason Ferroelectr Freq Control. 2021 Jan;68(1):127-135. doi: 10.1109/TUFFC.2020.3012868. Epub 2020 Dec 23. PMID: 32746231; PMCID: PMC7863589.
  30. McMahon D, Oakden W, Hynynen K. Investigating the effects of dexamethasone on blood-brain barrier permeability and inflammatory response following focused ultrasound and microbubble exposure. Theranostics. 2020 Jan 1;10(4):1604-1618. doi: 10.7150/thno.40908. eCollection 2020. PubMed PMID: 32042325; PubMed Central PMCID: PMC6993222.
  31. Deng L, Hughes A, Hynynen K. A Noninvasive Ultrasound Resonance Method for Detecting Skull Induced Aberrations May Provide a Signal for Adaptive Focusing. IEEE Trans Biomed Eng. 2020 Jan 16. doi: 10.1109/TBME.2020.2967033. PubMed PMID: 31976875.
  32. Tran WT, Ibáñez C, Pinto MP, Sanchez C, Czarnota GJ, Merino T. Eribulin-induced radiation recall dermatitis: a case report and brief review of the literature. Ecancermedicalscience. 2020 Jan 23;14:1006. doi: 10.3332/ecancer.2020.1006. eCollection 2020. PubMed PMID: 32104208; PubMed Central PMCID: PMC7039694.
  33. Saednia K, Tabbarah S, Lagree A, Wu T, Klein J, Garcia E, Hall M, Chow E, Rakovitch E, Childs C, Sadeghi-Naini A, Tran WT. Quantitative Thermal Imaging Biomarkers to Detect Acute Skin Toxicity From Breast Radiation Therapy Using Supervised Machine Learning. Int J Radiat Oncol Biol Phys. 2020 Apr 1;106(5):1071-1083. doi: 10.1016/j.ijrobp.2019.12.032. Epub 2020 Jan 23. PubMed PMID: 31982495.
  34. Kheirkhah N, Dempsey SCH, Rivaz H, Samani A, Sadeghi-Naini A. A Tissue Mechanics Based Method to Improve Tissue Displacement Estimation in Ultrasound Elastography. Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:2051-2054. doi: 10.1109/EMBC44109.2020.9175869. PMID: 33018408.
  35. Jaberipour M, Sahgal A, Soliman H, Sadeghi-Naini A. Predicting Local Failure after Stereotactic Radiation Therapy in Brain Metastasis using Quantitative CT and Machine Learning. Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:1323-1326. doi: 10.1109/EMBC44109.2020.9175746. PMID: 33018232.
  36. Saednia K, Jalalifar A, Ebrahimi S, Sadeghi-Naini A. An Attention-Guided Deep Neural Network for Annotating Abnormalities in Chest X-ray Images: Visualization of Network Decision Basis.  Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:1258-1261. doi: 10.1109/EMBC44109.2020.9175378. PMID: 33018216.
  37. Jalalifar A, Soliman H, Ruschin M, Sahgal A, Sadeghi-Naini A. A Brain Tumor Segmentation Framework Based on Outlier Detection Using One-Class Support Vector Machine. Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:1067-1070. doi: 10.1109/EMBC44109.2020.9176263. PMID: 33018170.
  38. Jalalifar A, Soliman H, Sahgal A, Sadeghi-Naini A. A Cascaded Deep-Learning Framework for Segmentation of Metastatic Brain Tumors Before and After Stereotactic Radiation Therapy. Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:1063-1066. doi: 10.1109/EMBC44109.2020.9175489. PMID: 33018169.
  39. Oglesby RT, Lam WW, Stanisz GJ. In vitro characterization of the serotonin biosynthesis pathway by CEST MRI. Magn Reson Med. 2020 Apr 16. doi: 10.1002/mrm.28281. [Epub ahead of print] PubMed PMID: 32301165.
  40. Mouraviev A, Detsky J, Sahgal A, Ruschin M, Lee YK, Karam I, Heyn C, Stanisz GJ, Martel AL. Use of Radiomics for the Prediction of Local Control of Brain Metastases After Stereotactic Radiosurgery. Neuro Oncol. 2020 Jan 20. pii: noaa007. doi: 10.1093/neuonc/noaa007. [Epub ahead of print] PubMed PMID: 31956919.
  41. Nosrati R, Wronski M, Tseng CL, Chung H, Pejović-Milić A, Morton G, Stanisz GJ. Postimplant Dosimetry of Permanent Prostate Brachytherapy: Comparison of MRI-Only and CT-MRI Fusion-Based Workflows. Int J Radiat Oncol Biol Phys. 2020 Jan 1;106(1):206-215. doi: 10.1016/j.ijrobp.2019.10.009. Epub 2019 Oct 15. PubMed PMID: 31627178.
  42. Salari A, Appak-Baskoy S, Ezzo M, Hinz B, Kolios MC, Tsai SSH. Dancing with the Cells Acoustic Microflows Generated by Oscillating Cells. Small. 2020 Aug;16(33):e2004323. doi: 10.1002/smll.202004323. Epub 2020 Jul 26. PMID: 33439539
  43. Moore MJ , Bodera F , Hernandez C , Shirazi N , Abenojar E , Exner AA , Kolios MC . The dance of the nanobubbles- detecting acoustic backscatter from sub-micron bubbles using ultra-high frequency acoustic microscopy. Nanoscale. 2020 Nov 7;12(41):21420-21428. doi: 10.1039/d0nr05390b. Epub 2020 Oct 20. PMID: 33079108
  44. Fadhel MN, Appak Baskoy S, Wang Y, Hysi E, Kolios MC. J Biophotonics. Use of photoacoustic imaging for monitoring vascular disrupting cancer treatments.2020 Sep 5:e202000209. doi: 10.1002/jbio.202000209.  PMID: 32888381
  45. Doan M, Sebastian JA, Caicedo JC, Siegert S, Roch A, Turner TR, Mykhailova O, Pinto RN, McQuin C, Goodman A, Parsons MJ, Wolkenhauer O, Hennig H, Singh S, Wilson A, Acker JP, Rees P, Kolios MC, Carpenter AE. Objective assessment of stored blood quality by deep learning. Proc Natl Acad Sci U S A. 2020 Sep 1;117(35):21381-21390. doi: 10.1073/pnas.2001227117. Epub 2020 Aug 24. PMID: 32839303
  46. Hysi E, Fadhel MN, Wang Y, Sebastian JA, Giles A, Czarnota GJ, Exner AA, Kolios MC. Photoacoustic imaging biomarkers for monitoring biophysical changes during nanobubble-mediated radiation treatment Photoacoustics. 2020 Jul 25;20:100201. doi: 10.1016/j.pacs.2020.100201. eCollection 2020 Dec. PMID: 32775198
  47. Fadhel MN, Hysi E, Assi H, Kolios MC. Fluence-matching technique using photoacoustic radiofrequency spectra for improving estimates of oxygen saturation.Photoacoustics. 2020 May 24;19:100182. doi: 10.1016/j.pacs.2020.100182. eCollection 2020 Sep. PMID: 32547922
  48. Jeganathan S, Budziszewski E, Bielecki P, Kolios MC, Exner AA. In situ forming implants exposed to ultrasound enhance therapeutic efficacy in subcutaneous murine tumors. J Control Release. 2020 Aug 10;324:146-155. doi: 10.1016/j.jconrel.2020.05.003. Epub 2020 May 7. PMID: 32389777
  49. de Leon A, Wei P, Bordera F, Wegierak D, McMillen M, Yan D, Hemmingsen C, Kolios MC, Pentzer EB, Exner AA. Pickering Bubbles as Dual-Modality Ultrasound and Photoacoustic Contrast Agents.ACS Appl Mater Interfaces. 2020 May 13;12(19):22308-22317. doi: 10.1021/acsami.0c02091. Epub 2020 May 1. PMID: 32307987
  50. Sojahrood AJ, Haghi H, Karshafian R, Kolios MC. Critical corrections to models of nonlinear power dissipation of ultrasonically excited bubbles. Ultrason Sonochem. 2020 Sep;66:105089. doi: 10.1016/j.ultsonch.2020.105089. Epub 2020 Mar 24. PMID: 32252009
  51. Nasr R, Falou O, Shahin A, Hysi E, Wirtzfeld LA, Berndl ESL, Kolios MC. Mean Scatterer Spacing Estimation Using Cepstrum-Based Continuous Wavelet Transform.IEEE Trans Ultrason Ferroelectr Freq Control. 2020 Jun;67(6):1118-1126. doi: 10.1109/TUFFC.2020.2963955. Epub 2020 Jan 6. PMID: 31905136

2019

  1. Tran WT, Suraweera H, Quaioit K, Cardenas D, Leong KX, Karam I, Poon I, Jang D, Sannachi L, Gangeh M, Tabbarah S, Lagree A, Sadeghi-Naini A, Czarnota GJ.
    Predictive quantitative ultrasound radiomic markers associated with treatment response in head and neck cancer. Future Sci OA. 2019 Nov 26;6(1):FSO433. doi:10.2144/fsoa-2019-0048. PubMed PMID: 31915534; PubMed Central PMCID: PMC6920736.
  2. Karami E, Soliman H, Ruschin M, Sahgal A, Myrehaug S, Tseng CL, Czarnota GJ,
    Jabehdar-Maralani P, Chugh B, Lau A, Stanisz GJ, Sadeghi-Naini A. Quantitative MRI Biomarkers of Stereotactic Radiotherapy Outcome in Brain Metastasis. Sci Rep. 2019 Dec 27;9(1):19830. doi: 10.1038/s41598-019-56185-5. PubMed PMID: 31882597;
    PubMed Central PMCID: PMC6934477.
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    Wright F, Curpen B, El Kaffas A, Faltyn J, Sadeghi-Naini A, Czarnota G.
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    Kiss A, Czarnota GJ. Locally advanced breast cancer treated with neoadjuvant chemotherapy and adjuvant radiotherapy: a retrospective cohort analysis. BMC
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  22. Foroozan F, O’Reilly MA, Hynynen K. Microbubble Localization for Three-Dimensional Superresolution Ultrasound Imaging Using Curve Fitting and Deconvolution Methods. IEEE Trans Biomed Eng. 2018 Dec;65(12):2692-2703. doi: 10.1109/TBME.2018.2813759. Epub 2018 Mar 8. PubMed PMID: 29993387; PubMed Central PMCID: PMC6459186.
  23. O’Reilly MA, Chinnery T, Yee ML, Wu SK, Hynynen K, Kerbel RS, Czarnota GJ, Pritchard KI, Sahgal A. Preliminary Investigation of Focused Ultrasound-Facilitated Drug Delivery for the Treatment of Leptomeningeal Metastases. Sci Rep. 2018 Jun 13;8(1):9013. doi: 10.1038/s41598-018-27335-y. PubMed PMID: 29899537; PubMed Central PMCID: PMC5998139.
  24. Jones RM, Deng L, Leung K, McMahon D, O’Reilly MA, Hynynen K. Three-dimensional transcranial microbubble imaging for guiding volumetric ultrasound-mediated blood-brain barrier opening. Theranostics. 2018 Apr 16;8(11):2909-2926. doi: 10.7150/thno.24911. eCollection 2018. PubMed PMID: 29896293; PubMed Central PMCID: PMC5996357.
  25. Alli S, Figueiredo CA, Golbourn B, Sabha N, Wu MY, Bondoc A, Luck A, Coluccia D, Maslink C, Smith C, Wurdak H, Hynynen K, O’Reilly M, Rutka JT. Brainstem blood brain barrier disruption using focused ultrasound: A demonstration of feasibility and enhanced doxorubicin delivery. J Control Release. 2018 Jul 10;281:29-41. doi:10.1016/j.jconrel.2018.05.005. Epub 2018 May 16. PubMed PMID: 29753957; PubMed Central PMCID: PMC6026028.
  26. Coluccia D, Figueiredo CA, Wu MY, Riemenschneider AN, Diaz R, Luck A, Smith C, Das S, Ackerley C, O’Reilly M, Hynynen K, Rutka JT. Enhancing glioblastoma treatment using cisplatin-gold-nanoparticle conjugates and targeted delivery with magnetic resonance-guided focused ultrasound. Nanomedicine. 2018 Jun;14(4):1137-1148. doi: 10.1016/j.nano.2018.01.021. Epub 2018 Feb 20. PubMed PMID: 29471172.
  27. Liu M, Jevtic S, Markham-Coultes K, Ellens NPK, O’Reilly MA, Hynynen K, Aubert I, McLaurin J. Investigating the efficacy of a combination Aβ-targeted treatment in a mouse model of Alzheimer’s disease. Brain Res. 2018 Jan 1;1678:138-145. doi: 10.1016/j.brainres.2017.10.015. Epub 2017 Oct 21. PubMed PMID: 29066368.
  28. Tran WT, Jerzak K, Lu FI, Klein J, Tabbarah S, Lagree A, Wu T, Rosado-Mendez I, Law E, Saednia K, Sadeghi-Naini A. Personalized Breast Cancer Treatments Using Artificial Intelligence in Radiomics and Pathomics. J Med Imaging Radiat Sci. 2019 Dec;50(4S2):S32-S41. doi: 10.1016/j.jmir.2019.07.010. Epub 2019 Aug 22. PubMed PMID: 31447230.
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  30. Chan RW, Myrehaug S, Stanisz GJ, Sahgal A, Lau AZ. Quantification of pulsed saturation transfer at 1.5T and 3T. Magn Reson Med. 2019 Nov;82(5):1684-1699. doi: 10.1002/mrm.27856. Epub 2019 Jun 22. PubMed PMID: 31228291.
  31. Miller JJ, Grist JT, Serres S, Larkin JR, Lau AZ, Ray K, Fisher KR, Hansen E, Tougaard RS, Nielsen PM, Lindhardt J, Laustsen C, Gallagher FA, Tyler DJ, Sibson N. (13)C Pyruvate Transport Across the Blood-Brain Barrier in Preclinical Hyperpolarised MRI. Sci Rep. 2018 Oct 10;8(1):15082. doi: 10.1038/s41598-018-33363-5. PubMed PMID: 30305655; PubMed Central PMCID: PMC6180068.
  32. Chan RW, Lau AZ, Detzler G, Thayalasuthan V, Nam RK, Haider MA. Evaluating the accuracy of multicomponent T(2) parameters for luminal water imaging of the prostate with acceleration using inner-volume 3D GRASE. Magn Reson Med. 2019 Jan;81(1):466-476. doi: 10.1002/mrm.27372. Epub 2018 Jul 29. PubMed PMID: 30058296.
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  35.  Tang MHY, Ching CK, Poon S, Chan SSS, Ng WY, Lam M, Wong CK, Pao R, Lau A, Mak TWL. Evaluation of three rapid oral fluid test devices on the screening of multiple drugs of abuse including ketamine. Forensic Sci Int. 2018 May;286:113-120. doi: 10.1016/j.forsciint.2018.03.004. Epub 2018 Mar 12. PubMed PMID: 29574346.
  36. Lewis AJM, Miller JJ, Lau AZ, Curtis MK, Rider OJ, Choudhury RP, Neubauer S, Cunningham CH, Carr CA, Tyler DJ. Noninvasive Immunometabolic Cardiac Inflammation Imaging Using Hyperpolarized Magnetic Resonance. Circ Res. 2018 Apr 13;122(8):1084-1093. doi: 10.1161/CIRCRESAHA.117.312535. Epub 2018 Feb 12. PubMed PMID: 29440071; PubMed Central PMCID: PMC5908252.
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  43. Jafari P, Hoover DA, Yaremko BP, Parraga G, Samani A, Sadeghi-Naini A. Incorporating Pathology-Induced Heterogeneities in a Patient-Specific Biomechanical Model of the Lung for Accurate Tumor Motion Estimation. Conf Proc IEEE Eng Med Biol Soc. 2019 Jul;2019:6964-6967. doi: 10.1109/EMBC.2019.8856707. PubMed PMID: 31947441.
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2018

  1. Tran WT, Childs C, Probst H, Farhat G, Czarnota GJ. Imaging Biomarkers for Precision Medicine in Locally Advanced Breast Cancer. J Med Imaging Radiat Sci. 2018 Dec;49(4):342-351. doi: 10.1016/j.jmir.2017.09.006. Epub 2018 Apr 1. Review. PubMed PMID: 30514549.
  2. Klein J, Lam WW, Czarnota, GJ and Stanisz GJ. Chemical exchange saturation transfer MRI to assess cell data in breast cancer xenografts at 7T. Oncotarget. 2018 9(59): 31490-31501.
  3. Gangeh MJ, Liu S, Tadayyon H, Czarnota GJ. Computer-Aided Theragnosis Based on Tumor Volumetric Information in Breast Cancer. IEEE Trans Ultrason Ferroelectr Freq Control. 2018 Aug;65(8):1359-1369.
  4. O’Reilly MA, Chinnery T, Yee ML, Wu SK, Hynynen K, Kerbel RS, Czarnota GJ, Pritchard KI, Sahgal A. Preliminary Investigation of Focused Ultrasound-Facilitated Drug Delivery for the Treatment of Leptomeningeal Metastases. Sci Rep. 2018 Jun 13;8(1):9013
  5. El Kaffas A, Al-Mahrouki A, Hashim A, Law N, Giles A, Czarnota GJ. Role of Acid Sphingomyelinase and Ceramide in Mechano-Acoustic Enhancement of Tumor Radiation Responses. J Natl Cancer Inst. 2018. 110(9).
  6. Sannachi L, Gangeh M, Tadayyon H, Sadeghi-Naini A, Sonal Gandhi S, Wright FC, Slodkowska E, Curpen B, Tran WT, Czarnota GJ. Response monitoring of breast cancer patients receiving neoadjuvant chemotherapy using quantitative ultrasound, texture, and molecular features.PLoS One. 2018. 13(1): e0189634.
  7. El Kaffas A, Gangeh MJ, Farhat G, Tran WT, Hashim A, Giles A, Czarnota GJ. Tumour Vascular Shutdown and Cell Death Following Ultrasound-Microbubble Enhanced Radiation Therapy. Theranostics. 2018 Jan 1;8(2):314-327.
  8. Lea-Banks H, O’Reilly MA, Hynynen K. Ultrasound-responsive droplets for therapy: A review. J Control Release. 2019 Jan 10;293:144-154. doi: 10.1016/j.jconrel.2018.11.028. Epub 2018 Nov 29. Review. PubMed PMID: 30503398; PubMed Central PMCID: PMC6459400.
  9. Bulner S, Prodeus A, Gariepy J, Hynynen K, Goertz DE. Enhancing Checkpoint Inhibitor Therapy with Ultrasound Stimulated Microbubbles. Ultrasound Med Biol. 2019 Feb;45(2):500-512. doi: 10.1016/j.ultrasmedbio.2018.10.002. Epub 2018 Nov 15. PubMed PMID: 30447880.
  10. Santos MA, Wu SK, Li Z, Goertz DE, Hynynen K. Microbubble-assisted MRI-guided focused ultrasound for hyperthermia at reduced power levels. Int J Hyperthermia. 2018;35(1):599-611. doi: 10.1080/02656736.2018.1514468. Epub 2018 Oct 8. PubMed PMID: 30295119.
  11. Alli S, Figueiredo CA, Golbourn B, Sabha N, Wu MY, Bondoc A, Luck A, Coluccia D, Maslink C, Smith C, Wurdak H, Hynynen K, O’Reilly M, Rutka JT. Brainstem blood brain barrier disruption using focused ultrasound: A demonstration of feasibility and enhanced doxorubicin delivery. J Control Release. 2018 Jul 10;281:29-41. doi: 10.1016/j.jconrel.2018.05.005. Epub 2018 May 16. PubMed PMID: 29753957; PubMed Central PMCID: PMC6026028.
  12. McMahon D, Hynynen K. Reply to Kovacs et al.: Concerning acute inflammatory response following focused ultrasound and microbubbles in the brain. Theranostics. 2018 Mar 8;8(8):2249-2250. doi: 10.7150/thno.25468. eCollection 2018. PubMed PMID: 29722372; PubMed Central PMCID: PMC5928886.
  13. Coluccia D, Figueiredo CA, Wu MY, Riemenschneider AN, Diaz R, Luck A, Smith C, Das S, Ackerley C, O’Reilly M, Hynynen K, Rutka JT. Enhancing glioblastoma treatment using cisplatin-gold-nanoparticle conjugates and targeted delivery with magnetic resonance-guided focused ultrasound. Nanomedicine. 2018 Jun;14(4):1137-1148. doi: 10.1016/j.nano.2018.01.021. Epub 2018 Feb 20. PubMed PMID: 29471172.
  14. Bailey C, Collins DJ, Tunariu N, Orton MR, Morgan VA, Feiweier T, Hawkes DJ, Leach MO, Alexander DC, Panagiotaki E. Microstructure Characterization of Bone Metastases from Prostate Cancer with Diffusion MRI: Preliminary Findings. Front Oncol. 2018 Feb 16;8:26. doi: 10.3389/fonc.2018.00026. eCollection 2018. PubMed PMID: 29503808; PubMed Central PMCID: PMC5820304.
  15. Hudson JM, Bailey C, Atri M, Stanisz G, Milot L, Williams R, Kiss A, Burns PN,Bjarnason GA. The prognostic and predictive value of vascular response parameters measured by dynamic contrast-enhanced-CT, -MRI and -US in patients with metastatic renal cell carcinoma receiving sunitinib. Eur Radiol. 2018 Jun;28(6):2281-2290. doi: 10.1007/s00330-017-5220-2. Epub 2018 Jan 30. PubMed PMID: 29383520.
  16. Bourne RM, Bailey C, Johnston EW, Pye H, Heavey S, Whitaker H, Siow B, Freeman A, Shaw GL, Sridhar A, Mertzanidou T, Hawkes DJ, Alexander DC, Punwani S, Panagiotaki E. Apparatus for Histological Validation of In Vivo and Ex Vivo Magnetic Resonance Imaging of the Human Prostate. Front Oncol. 2017 Mar 24;7:47. doi: 10.3389/fonc.2017.00047. eCollection 2017. PubMed PMID: 28393049; PubMed Central PMCID: PMC5364138.
  17. Mehrabian H, Desmond KL, Chavez S, Bailey C, Rola R, Sahgal A, Czarnota GJ, Soliman H, Martel AL, Stanisz GJ. Water Exchange Rate Constant as a Biomarker of Treatment Efficacy in Patients With Brain Metastases Undergoing Stereotactic Radiosurgery. Int J Radiat Oncol Biol Phys. 2017 May 1;98(1):47-55. doi: 10.1016/j.ijrobp.2017.01.016. Epub 2017 Jan 10. PubMed PMID: 28258890.
  18. Bailey C, Siow B, Panagiotaki E, Hipwell JH, Mertzanidou T, Owen J, Gazinska P, Pinder SE, Alexander DC, Hawkes DJ. Microstructural models for diffusion MRI in breast cancer and surrounding stroma: an ex vivo study. NMR Biomed. 2017 Feb;30(2). doi: 10.1002/nbm.3679. Epub 2016 Dec 21. PubMed PMID: 28000292; PubMed Central PMCID: PMC5244665.
  19. Acconcia CN, Wright A, Goertz DE. Translational dynamics of individual microbubbles with millisecond scale ultrasound pulses. J Acoust Soc Am. 2018 Nov;144(5):2859. doi: 10.1121/1.5063353. PubMed PMID: 30522286.
  20. Pellow C, Goertz DE, Zheng G. Breaking free from vascular confinement: status and prospects for submicron ultrasound contrast agents. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2018 Jul;10(4):e1502. doi: 10.1002/wnan.1502. Epub 2017 Nov 17. Review. PubMed PMID: 29148219.
  21. O’Reilly MA, Hynynen K. Ultrasound and Microbubble-Mediated Blood-Brain Barrier Disruption for Targeted Delivery of Therapeutics to the Brain. Methods Mol Biol. 2018;1831:111-119. doi: 10.1007/978-1-4939-8661-3_9. PubMed PMID: 30051428.
  22. Foroozan F, O’Reilly MA, Hynynen K. Microbubble Localization for Three-Dimensional Superresolution Ultrasound Imaging Using Curve Fitting and Deconvolution Methods. IEEE Trans Biomed Eng. 2018 Dec;65(12):2692-2703. doi: 10.1109/TBME.2018.2813759. Epub 2018 Mar 8. PubMed PMID: 29993387; PubMed Central PMCID: PMC6459186.
  23. O’Reilly MA, Chinnery T, Yee ML, Wu SK, Hynynen K, Kerbel RS, Czarnota GJ, Pritchard KI, Sahgal A. Preliminary Investigation of Focused Ultrasound-Facilitated Drug Delivery for the Treatment of Leptomeningeal Metastases. Sci Rep. 2018 Jun 13;8(1):9013. doi: 10.1038/s41598-018-27335-y. PubMed PMID: 29899537; PubMed Central PMCID: PMC5998139.
  24. Jones RM, Deng L, Leung K, McMahon D, O’Reilly MA, Hynynen K. Three-dimensional transcranial microbubble imaging for guiding volumetric ultrasound-mediated blood-brain barrier opening. Theranostics. 2018 Apr 16;8(11):2909-2926. doi: 10.7150/thno.24911. eCollection 2018. PubMed PMID: 29896293; PubMed Central PMCID: PMC5996357.
  25. Liu M, Jevtic S, Markham-Coultes K, Ellens NPK, O’Reilly MA, Hynynen K, Aubert I, McLaurin J. Investigating the efficacy of a combination Aβ-targeted treatment in a mouse model of Alzheimer’s disease. Brain Res. 2018 Jan 1;1678:138-145. doi: 10.1016/j.brainres.2017.10.015. Epub 2017 Oct 21. PubMed PMID: 29066368.
  26. Sannachi L, Gangeh M, Tadayyon H, Sadeghi-Naini A, Gandhi S, Wright FC, Slodkowska E, Curpen B, Tran W, Czarnota GJ. Response monitoring of breast cancer patients receiving neoadjuvant chemotherapy using quantitative ultrasound, texture, and molecular features. PLoS One. 2018 Jan 3;13(1):e0189634. doi: 10.1371/journal.pone.0189634. eCollection 2018. PubMed PMID: 29298305; PubMed Central PMCID: PMC5751990.
  27. Lam WW, Oakden W, Murray L, Klein J, Iorio C, Screaton RA, Koletar MM, Chu W,  Liu SK, Stanisz GJ. Differentiation of Normal and Radioresistant Prostate Cancer  Xenografts Using Magnetization Transfer-Prepared MRI. Sci Rep. 2018 Jul 11;8(1):10447. doi: 10.1038/s41598-018-28731-0. PubMed PMID: 29992999; PubMed Central PMCID: PMC6041323.
  28. Mehrabian H, Myrehaug S, Soliman H, Sahgal A, Stanisz GJ. Evaluation of Glioblastoma Response to Therapy With Chemical Exchange Saturation Transfer. Int J Radiat Oncol Biol Phys. 2018 Jul 1;101(3):713-723. doi: 10.1016/j.ijrobp.2018.03.057. Epub 2018 Apr 4. PubMed PMID: 29893279.
  29. Dang T, Suchy M, Truong YJ, Oakden W, Lam WW, Lazurko C, Facey G, Stanisz GJ, Shuhendler AJ. Hydrazo-CEST: Hydrazone-Dependent Chemical Exchange Saturation Transfer Magnetic Resonance Imaging Contrast Agents. Chemistry. 2018 Jun 26;24(36):9148-9156. doi: 10.1002/chem.201801671. Epub 2018 Jun 6. PubMed PMID: 29645309.
  30. Mehrabian H, Lam WW, Myrehaug S, Sahgal A, Stanisz GJ. Glioblastoma (GBM) effects on quantitative MRI of contralateral normal appearing white matter. J Neurooncol. 2018 Aug;139(1):97-106. doi: 10.1007/s11060-018-2846-0. Epub 2018 Mar 28. PubMed PMID: 29594656.
  31. Mehrabian H, Myrehaug S, Soliman H, Sahgal A, Stanisz GJ. Quantitative Magnetization Transfer in Monitoring Glioblastoma (GBM) Response to Therapy. Sci Rep. 2018 Feb 6;8(1):2475. doi: 10.1038/s41598-018-20624-6. PubMed PMID: 29410469; PubMed Central PMCID: PMC5802834.
  32. van Zijl PCM, Lam WW, Xu J, Knutsson L, Stanisz GJ. Magnetization Transfer Contrast and Chemical Exchange Saturation Transfer MRI. Features and analysis of the field-dependent saturation spectrum. Neuroimage. 2018 Mar;168:222-241. doi:10.1016/j.neuroimage.2017.04.045. Epub 2017 Apr 21. Review. PubMed PMID: 28435103; PubMed Central PMCID: PMC5650949.

2017

  1. Al-Mahrouki A, Giles A, Hashim A, Kim HC, El-Falou A, Rowe-Magnus D, et al. (2017) Microbubble-based enhancement of radiation effect: Role of cell membrane ceramide metabolism. PLoS ONE 12(7): e0181951. https://doi.org/10.1371/journal.pone.0181951.
  2. Wirtzfeld L, Berndl ESL, Czarnota GJ, Kolios MC. Monitoring Quantitative Ultrasound Parameter Changes in a Cell Pellet Model of Cell Starvation. Biophys J. 2017.
  3. Tran WT, Gangeh MJ, Sannachi L, Chin L, Watkins E, Bruni SG, Rastegar RF, Curpen B, Trudeau M, Gandhi S, Yaffe M, Slodkowska E, Childs C, Sadeghi-Naini A, Czarnota GJ. Predicting breast cancer response to neoadjuvant chemotherapy using pretreatment diffuse optical spectroscopic texture analysis. Br J Cancer. 2017 May 9;116(10):1329-1339. doi: 10.1038/bjc.2017.97. Epub 2017 Apr 18. PubMed PMID: 28419079; PubMed Central PMCID: PMC5482739.
  4. Tadayyon H, Sannachi L, Gangeh MJ, Kim C, Ghandi S, Trudeau M, Pritchard K, Tran WT, Slodkowska E, Sadeghi-Naini A, Czarnota GJ. A priori Prediction of Neoadjuvant Chemotherapy Response and Survival in Breast Cancer Patients using Quantitative Ultrasound. Sci Rep. 2017;7:45733.
  5. Pasternak M, Doss L, Farhat G, Al-Mahrouki A, Kim CH, Kolios M, Tran WT, Czarnota GJ. Effect of chromatin structure on quantitative ultrasound parameters. Oncotarget. 2017;8(12):19631-19644.
  6. Mehrabian H, Desmond KL, Chavez S, Bailey C, Rola R, Sahgal A, Czarnota GJ, Soliman H, Martel AL, Stanisz GJ. Water Exchange Rate Constant as a Biomarker of Treatment Efficacy in Patients with Brain Metastases Undergoing Stereotactic Radiosurgery. Int J Radiat Oncol Biol Phys. 2017 Jan 10. pii: S0360-3016(17)30020-2. doi: 10.1016/j.ijrobp.2017.01.016.
  7. Bushehri A, Czarnota GJ, Zhang L, Hynynen K, Huang Y, Chan M, Chu W, Dennis K, Mougenot C, Coccagna J, Sahgal A, Chow E, DeAngelis C. Urinary cytokines/chemokines after magnetic resonance-guided high intensity focused ultrasound for palliative treatment of painful bone metastases. Ann Palliat Med. 2017 Jan;6(1):36-54.
  8. McMahon D, Hynynen K. Acute Inflammatory Response Following Increased Blood-Brain Barrier Permeability Induced by Focused Ultrasound is Dependent on Microbubble Dose. Theranostics. 2017 Sep 15;7(16):3989-4000. doi: 10.7150/thno.21630. eCollection 2017. PubMed PMID: 29109793; PubMed Central PMCID: PMC5667420.
  9. Santos MA, Goertz DE, Hynynen K. Focused Ultrasound Hyperthermia Mediated Drug Delivery Using Thermosensitive Liposomes and Visualized With in vivo Two-Photon Microscopy. Theranostics. 2017 Jul 7;7(10):2718-2731. doi: 10.7150/thno.19662. eCollection 2017. PubMed PMID: 28819458; PubMed Central PMCID: PMC5558564.
  10. McMahon D, Bendayan R, Hynynen K. Acute effects of focused ultrasound-induced increases in blood-brain barrier permeability on rat microvascular transcriptome. Sci Rep. 2017 Apr 4;7:45657. doi: 10.1038/srep45657. PubMed PMID: 28374753; PubMed Central PMCID: PMC5379491.
  11. O’Reilly MA, Hough O, Hynynen K. Blood-Brain Barrier Closure Time After Controlled Ultrasound-Induced Opening Is Independent of Opening Volume. J Ultrasound Med. 2017 Mar;36(3):475-483. doi: 10.7863/ultra.16.02005. Epub 2017 Jan 21. PubMed PMID: 28108988; PubMed Central PMCID: PMC5319892.
  12. Deng L, O’Reilly MA, Jones RM, An R, Hynynen K. A multi-frequency sparse hemispherical ultrasound phased array for microbubble-mediated transcranial therapy and simultaneous cavitation mapping. Phys Med Biol. 2016 Dec 21;61(24):8476-8501. Epub 2016 Nov 15. PubMed PMID: 27845920; PubMed Central PMCID: PMC5135599.
  13. Santos MA, Goertz DE, Hynynen K. Focused Ultrasound Hyperthermia Mediated Drug Delivery Using Thermosensitive Liposomes and Visualized With in vivo Two-Photon Microscopy. Theranostics. 2017 Jul 7;7(10):2718-2731. doi: 10.7150/thno.19662.eCollection 2017. PubMed PMID: 28819458; PubMed Central PMCID: PMC5558564.
  14. Acconcia CN, Jones RM, Goertz DE, O’Reilly MA, Hynynen K. Megahertz rate, volumetric imaging of bubble clouds in sonothrombolysis using a sparse hemispherical receiver array. Phys Med Biol. 2017 Sep 5;62(18):L31-L40. doi: 10.1088/1361-6560/aa84d7. PubMed PMID: 28786395.
  15. O’Reilly MA, Jones RM, Barrett E, Schwab A, Head E, Hynynen K. Investigation of the Safety of Focused Ultrasound-Induced Blood-Brain Barrier Opening in a Natural Canine Model of Aging. Theranostics. 2017 Aug 22;7(14):3573-3584. doi: 10.7150/thno.20621. eCollection 2017. PubMed PMID: 28912896; PubMed Central PMCID: PMC5596444.
  16. Sadeghi-Naini A, Suraweera H, Tran WT, Hadizad F, Bruni G, Rastegar RF, Curpen B, Czarnota GJ. Breast-Lesion Characterization using Textural Features of Quantitative Ultrasound Parametric Maps. Sci Rep. 2017 Oct 20;7(1):13638. doi: 10.1038/s41598-017-13977-x. PubMed PMID: 29057899; PubMed Central PMCID: PMC5651882.
  17. Sadeghi-Naini A, Sannachi L, Tadayyon H, Tran WT, Slodkowska E, Trudeau M, Gandhi S, Pritchard K, Kolios MC, Czarnota GJ. Chemotherapy-Response Monitoring of Breast Cancer Patients Using Quantitative Ultrasound-Based Intra-Tumour Heterogeneities. Sci Rep. 2017 Sep 4;7(1):10352. doi: 10.1038/s41598-017-09678-0. PubMed PMID: 28871171; PubMed Central PMCID: PMC5583340.
  18. Tadayyon H, Sannachi L, Gangeh MJ, Kim C, Ghandi S, Trudeau M, Pritchard K, Tran WT, Slodkowska E, Sadeghi-Naini A, Czarnota GJ. A priori Prediction of Neoadjuvant Chemotherapy Response and Survival in Breast Cancer Patients using Quantitative Ultrasound. Sci Rep. 2017 Apr 12;7:45733. doi: 10.1038/srep45733. PubMed PMID: 28401902; PubMed Central PMCID: PMC5388850.
  19. Mousavi SR, Rivaz H, Czarnota GJ, Samani A, Sadeghi-Naini A. Ultrasound Elastography of the Prostate Using an Unconstrained Modulus Reconstruction Technique: A Pilot Clinical Study. Transl Oncol. 2017 Oct;10(5):744-751. doi: 10.1016/j.tranon.2017.06.006. Epub 2017 Jul 20. Review. PubMed PMID: 28735201; PubMed Central PMCID: PMC5522957.
  20. Tadayyon H, Sannachi L, Gangeh M, Sadeghi-Naini A, Tran W, Trudeau ME, Pritchard K, Ghandi S, Verma S, Czarnota GJ. Correction: Quantitative ultrasound assessment of breast tumor response to chemotherapy using a multi-parameter approach. Oncotarget. 2017 May 23;8(21):35481. doi: 10.18632/oncotarget.18068. PubMed PMID: 28545221; PubMed Central PMCID: PMC5471072.
  21. Lake EMR, Mester J, Thomason LA, Adams C, Bazzigaluppi P, Koletar M, Janik R, Carlen P, McLaurin J, Stanisz GJ, Stefanovic B. Modulation of the peri-infarct neurogliovascular function by delayed COX-1 inhibition. J Magn Reson Imaging. 2017 Aug;46(2):505-517. doi: 10.1002/jmri.25541. Epub 2016 Nov 7. PubMed PMID: 28703413.
  22. Kapadia A, Mehrabian H, Conklin J, Symons SP, Maralani PJ, Stanisz GJ, Sahgal A, Soliman H, Heyn CC. Temporal evolution of perfusion parameters in brain metastases treated with stereotactic radiosurgery: comparison of intravoxel incoherent motion and dynamic contrast enhanced MRI. J Neurooncol. 2017 Oct;135(1):119-127. doi: 10.1007/s11060-017-2556-z. Epub 2017 Jul 1. PubMed PMID: 28669014.
  23. van Zijl PCM, Lam WW, Xu J, Knutsson L, Stanisz GJ. Magnetization Transfer Contrast and Chemical Exchange Saturation Transfer MRI. Features and analysis of  the field-dependent saturation spectrum. Neuroimage. 2018 Mar;168:222-241. doi: 10.1016/j.neuroimage.2017.04.045. Epub 2017 Apr 21. Review. PubMed PMID: 28435103; PubMed Central PMCID: PMC5650949.
  24. Mehrabian H, Desmond KL, Chavez S, Bailey C, Rola R, Sahgal A, Czarnota GJ, Soliman H, Martel AL, Stanisz GJ. Water Exchange Rate Constant as a Biomarker of Treatment Efficacy in Patients With Brain Metastases Undergoing Stereotactic Radiosurgery. Int J Radiat Oncol Biol Phys. 2017 May 1;98(1):47-55. doi: 10.1016/j.ijrobp.2017.01.016. Epub 2017 Jan 10. PubMed PMID: 28258890.
  25. Mehrabian H, Desmond KL, Soliman H, Sahgal A, Stanisz GJ. Differentiation between Radiation Necrosis and Tumor Progression Using Chemical Exchange Saturation Transfer. Clin Cancer Res. 2017 Jul 15;23(14):3667-3675. doi: 10.1158/1078-0432.CCR-16-2265. Epub 2017 Jan 17. PubMed PMID: 28096269.
  26. Desmond KL, Mehrabian H, Chavez S, Sahgal A, Soliman H, Rola R, Stanisz GJ. Chemical exchange saturation transfer for predicting response to stereotactic radiosurgery in human brain metastasis. Magn Reson Med. 2017 Sep;78(3):1110-1120. doi: 10.1002/mrm.26470. Epub 2016 Sep 30. PubMed PMID: 27690156.

2016

  1. Gangeh MJ, Hashim A, Giles A, Sannachi L, Czarnota GJ. Computer Aided Prognosis for Cell Death Categorization and Prediction In vivo Using Quantitative Ultrasound and Machine Learning Techniques. [Epub ahead of print]. Medical Physics, vol. 43, no. 12, Dec. 2016.
  2. Pasternak MM, Sadeghi-Naini A, Ranieri SM, Giles A, Oelze ML, Kolios MC, Czarnota GJ. High-frequency ultrasound detection of cell death: Spectral differentiation of different forms of cell death in vitro. Oncoscience. [Epub ahead of print]. DOI: 10.18632/oncoscience.319
  3. Tran WT, Childs C, Chin L, Slodkowska E, Sannachi L, Tadayyon H, Watkins E, Wong SL, Curpen B, El Kaffas A, Al-Mahrouki A, Sadeghi-Naini A, Czarnota GJ. Multiparametric monitoring of chemotherapy treatment response in locally advanced breast cancer using quantitative ultrasound and diffuse optical spectroscopy. Oncotarget. 2016 Apr 12;7(15):19762-80 DOI: 10.18632/oncotarget.7844. PubMed PMID: 26942698. PubMed Central PMCID: PMC4991417.
  4. Lai P, Tarapacki C, Tran WT, El Kaffas A, Lee J, Hupple C, Iradji S, Giles A, Al-Mahrouki A, Czarnota GJ. Breast tumor response to ultrasound mediated excitation of microbubbles and radiation therapy in vivo. Oncoscience. 2016 Mar 24;3(3-4):98-108. DOI: 10.18632/oncoscience.299. PubMed PMID: 27226983. PubMed Central PMCID: PMC4872648. 
  5. Tadayyon H, Sannachi L, Gangeh M, Sadeghi-Naini A, Tran W, Trudeau ME, Pritchard K, Ghandi S, Verma S, Czarnota GJ. Quantitative ultrasound assessment of breast tumor response to chemotherapy using a multi-parameter approach. Oncotarget. 2016 Apr 20. DOI: 10.18632/oncotarget.8862. PubMed PMID: 27105515.
  6. Gangeh MJ, Tadayyon H, Sannachi L, Sadeghi-Naini A, Tran WT, Czarnota GJ. Computer Aided Theragnosis Using Quantitative Ultrasound Spectroscopy and Maximum Mean Discrepancy in Locally Advanced Breast Cancer. IEEE Trans Med Imaging. 2016 Mar;35(3):778-90. DOI: 10.1109/TMI.2015.2495246. PubMed PMID: 26529750. 
  7. Pasternak MM, Strohm EM, Berndl ES, Kolios MC. Properties of cells through life and death – an acoustic microscopy investigation. Cell Cycle.2015;14(18):2891-8. DOI: 10.1080/15384101.2015.1069925. PubMed PMID: 26178635 PubMed Central PMCID: PMC4825614.
  8. Fadhel MN, Kibria F, and Kolios MC. Photoacoustic spectral analysis to sense programmed erythrocyte cell death (eryptosis) for monitoring cancer response to treatment. Proc. SPIE 9708, Photons Plus Ultrasound: Imaging and Sensing 2016, 97080O (March 15, 2016). DOI: 10.1117/12.2211760.
  9. Fadhel MN, Hysi E, Zalev J and Kolios MC. Photoacoustic simulation of microvessel bleeding: spectral analysis and its implication for monitoring vascular-targeted treatments. Proc. SPIE 9708, Photons Plus Ultrasound: Imaging and Sensing 2016, 97081B (March 15, 2016). DOI: 10.1117/12.2211774.
  10. Fadhel MN, Berndl ES, Strohm EM, Kolios MC. High-Frequency Acoustic Impedance Imaging of Cancer Cells. Ultrasound Med Biol. 2015 Oct;41(10):2700-13. DOI: 10.1016/j.ultrasmedbio.2015.06.003. PubMed PMID: 26166459.
  11. May JP, Hysi E, Wirtzfeld LA, Undzys E, Li SD, Kolios MC. Photoacoustic Imaging of Cancer Treatment Response: Early Detection of Therapeutic Effect from Thermosensitive Liposomes. PLoS ONE 2016 11(10): e0165345. DOI: 10.1371/journal.pone.0165345
  12. Moore MJ, Strohm EM, and Kolios MC . Assessment of the Nucleus-to-Cytoplasmic Ratio in MCF-7 Cells Using Ultra-high Frequency Ultrasound and Photoacoustics. Int J Thermophys 2016 37:118 DOI10.1007/s10765-016-2129-y.
  13. Strohm EM, Moore MJ and Kolios MC. Acoustic and photoacoustic microscopy imaging of single leukocytes. Proc. SPIE 9708, Photons Plus Ultrasound: Imaging and Sensing 2016, 97082G (March 15, 2016). DOI:10.1117/12.2211759.
  14. Moore MJ ; Strohm EM and Kolios MC. Simultaneous photoacoustic and optical attenuation imaging of single cells using photoacoustic microscopy. Proc. SPIE 9708, Photons Plus Ultrasound: Imaging and Sensing 2016, 970850 (March 15, 2016). DOI:10.1117/12.2212961
  15. Klein J, Czarnota G, Lam W, Tarapacki C, Stanisz G. In Vivo Measurements of CEST Magnetic Resonance Imaging Signal in Breast Cancer Xenografts at 7T. Int JRadiat Oncol Biol Phys. 2016 Oct 1;96(2S):E648. DOI:10.1016/j.ijrobp.2016.06.2251. PubMed PMID: 27675257.

2015

  1. Tadayyon H, Sannachi L, Sadeghi-Naini A, Al-Mahrouki A, Tran WT, Kolios MC, Czarnota GJ. Quantification of Ultrasonic Scattering Properties of In Vivo Tumor Cell Death in Mouse Models of Breast Cancer. Transl Oncol. 2015 Dec;8(6):463-73. DOI: 10.1016/j.tranon.2015.11.001. PubMed PMID: 26692527; PubMed Central PMCID: PMC4701005.
  2. Sadeghi-Naini A, Zhou S, Gangeh MJ, Jahedmotlagh Z, Falou O, Ranieri S, Azrif M, Giles A, Czarnota GJ. Quantitative evaluation of cell death response in vitro and in vivo using conventional-frequency ultrasound. Oncoscience. 2015 Sep 3;2(8):716-26. PubMed PMID: 26425663; PubMed Central PMCID: PMC4580065.
  3. Sannachi L, Tadayyon H, Sadeghi-Naini A, Tran W, Gandhi S, Wright F, Oelze M, Czarnota G. Non-invasive evaluation of breast cancer response to chemotherapy using quantitative ultrasonic backscatter parameters. Med Image Anal. 2015 Feb;20(1):224-36. DOI: 10.1016/j.media.2014.11.009. PubMed PMID: 25534283.
  4. Sadeghi-Naini A, Vorauer E, Chin L, Falou O, Tran WT, Wright FC, Gandhi S, Yaffe MJ, Czarnota GJ. Early detection of chemotherapy-refractory patients by monitoring textural alterations in diffuse optical spectroscopic images. Med Phys. 2015 Nov;42(11):6130-46. DOI: 10.1118/1.4931603. PubMed PMID: 26520706.
  5. Al-Mahrouki AA, Wong E, Czarnota GJ. Ultrasound-stimulated microbubble enhancement of radiation treatments: endothelial cell function and mechanism. Oncoscience. 2015 Dec 15;2(12):944-57. PubMed PMID: 26909363. PubMed Central PMCID: PMC4741402.
  6. El Kaffas A, Sadeghi-Naini A, Falou O, Tran WT, Zhou S, Hashim A, Fernandes J, Giles A, Czarnota GJ. Assessment of tumor response to radiation and vascular targeting therapy in mice using quantitative ultrasound spectroscopy. Med Phys. 2015 Aug;42(8):4965-73. DOI: 10.1118/1.4926554. PubMed PMID: 26233222.
  7. Wirtzfeld LA, Berndl ES, Kolios MC. Ultrasonic Characterization of Extra-Cellular Matrix in Decellularized Murine Kidney and Liver. IEEE International Ultrasonics Symposium Proceedings 2015. DOI: 10.1109/ULTSYM.2015.0170
  8. Hysi E, May JP, Wirtzfeld L, Elijus Undyzs, Shyh-Dar Li, Kolios MC. Probing the in vivo changes in oxygen saturation with photoacoustic imaging as a non-invasive means of assessing treatment progression. Proc. of SPIE Vol. 9323, 93231Z DOI: 10.1117/12.2080372
  9. Muhannad Fadhel, and Kolios MC. Photoacoustic speckle and spectral analysis of vasculature trees. IFMBE Proceedings World Congress on Medical Physics and Biomedical Engineering Volume 51, 2015, Pages 1084-1087 DOI: 10.1007/978-3-319-19387-8_264
  10. Zalev J and Kolios MC. Exact solution for a photoacoustic wave from a finite-length cylindrical source. Journal of the Acoustical Society of America 137 (4), Pages: 1675–1682 DOI: 10.1121/1.4916273
  11. Moore MJ, Strohm EM, and Kolios MC. Evaluation of the Morphological Parameters of Cancer Cells Using High-Frequency Ultrasound and Photoacoustics. IEEE International Ultrasonics Symposium Proceedings. DOI:10.1109/ULTSYM.2015.0246
  12. Karmakar S, Hysi E, Kolios MC and Saha RK. Realistic photoacoustic image simulations of collections of solid spheres using linear array transducer. Proc. of SPIE Vol. 9323, 932339 DOI: 10.1117/12.2080794
  13. Nasr R, Falou O, Wirtzfeld L, Berndl E, and Kolios MC. Mean scatterer spacing estimation from pellets using cepstral analysis: A preliminary study. International Conference on Advances in Biomedical Engineering (ICABME) Article number 7323313, Pages 305-308 DOI: 10.1109/ICABME.2015.7323313 
  14. Mehrabian H, Da Rosa M, Haider MA, Martel AL. Pharmacokinetic analysis of prostate cancer using independent component analysis. Magn Reson Imaging. 2015 Dec;33(10):1236-45. DOI: 10.1016/j.mri.2015.08.009. PubMed PMID: 26297961.

2014

  1. Sannachi L, Tadayyon H, Sadeghi-Naini A, Tran W, Gandhi S, Wright F, Oelze M, Czarnota G. Non-invasive evaluation of breast cancer response to chemotherapy using quantitative ultrasonic backscatter parameters. Med Image Anal. 2015 Feb;20(1):224-36. doi: 10.1016/j.media.2014.11.009. Epub 2014 Nov 25. PMID: 25534283.
  2. Tadayyon H, Sadeghi-Naini A, Czarnota GJ. Noninvasive characterization of locally advanced breast cancer using textural analysis of quantitative ultrasound parametric images. Transl Oncol. 2014 Dec;7(6):759-67. DOI: 10.1016/j.tranon.2014.10.007. PubMed PMID: 25500086 PubMed Central PMCID: PMC4311023
  3. Sadeghi-Naini A, Sannachi L, Pritchard K, Trudeau M, Gandhi S, Wright FC, Zubovits J, Yaffe MJ, Kolios MC, Czarnota GJ. Early prediction of therapy responses and outcomes in breast cancer patients using quantitative ultrasound spectral texture. Oncotarget. 2014 Jun 15;5(11):3497-511. PubMed PMID: 24939867 PubMed Central PMCID: PMC4116498.
  4. Tadayyon H, Sadeghi-Naini A, Wirtzfeld L, Wright FC, Czarnota G. Quantitative ultrasound characterization of locally advanced breast cancer by estimation of its scatterer properties. Med Phys. 2014 Jan;41(1):012903. DOI: 10.1118/1.4852875. PubMed PMID: 24387530.
  5. Kim HC, Al-Mahrouki A, Gorjizadeh A, Sadeghi-Naini A, Karshafian R, Czarnota GJ. Quantitative ultrasound characterization of tumor cell death: ultrasound-stimulated microbubbles for radiation enhancement. PLoS One. 2014 Jul 22;9(7):e102343. DOI: 10.1371/journal.pone.0102343. PubMed PMID: 25051356. PubMed Central PMCID: PMC4106764.
  6. El Kaffas A, Nofiele J, Giles A, Cho S, Liu SK, Czarnota GJ. Dll4-notch signalling blockade synergizes combined ultrasound-stimulated microbubble and radiation therapy in human colon cancer xenografts. PLoS One. 2014 Apr 15;9(4):e93888. DOI: 10.1371/journal.pone.0093888. PubMed PMID: 24736631. PubMed Central PMCID: PMC3988033.
  7. Al-Mahrouki AA, Iradji S, Tran WT, Czarnota GJ. Cellular characterization of ultrasound stimulated microbubble radiation enhancement in a prostate cancer xenograft model. Dis Model Mech. 2014 Mar;7(3):363-72. DOI: 10.1242/dmm.012922. PubMed PMID: 24487407. PubMed Central PMCID: PMC3944496.
  8. El Kaffas A, Al-Mahrouki A, Tran WT, Giles A, Czarnota GJ. Sunitinib effects on the radiation response of endothelial and breast tumor cells. Microvasc Res. 2014 Mar; 92:1-9. DOI: 10.1016/j.mvr.2013.10.008. PubMed PMID: 24215790.
  9. Briggs K, Al Mahrouki A, Nofiele J, El-Falou A, Stanisz M, Kim HC, Kolios MC, Czarnota GJ. Non-invasive monitoring of ultrasound-stimulated microbubble radiation enhancement using photoacoustic imaging. Technol Cancer Res Treat. 2014 Oct;13(5):435-44. DOI: 10.7785/tcrtexpress.2013.600266. PubMed PMID: 24000993. PubMed Central PMCID: PMC4527466.
  10. Gangeh MJ, Sadeghi-Naini A, Diu M, Tadayyon H, Kamel MS, Czarnota GJ. Categorizing extent of tumor cell death response to cancer therapy using quantitative ultrasound spectroscopy and maximum mean discrepancy. IEEE Trans Med Imaging. 2014 Jun;33(6):1390-400. DOI: 10.1109/TMI.2014.2312254. PubMed PMID: 24893261.
  11. Nofiele JT, Czarnota GJ, Cheng HL. Noninvasive manganese-enhanced magnetic resonance imaging for early detection of breast cancer metastatic potential. Mol Imaging. 2014;13. DOI: 10.2310/7290.2013.00071. PubMed PMID: 24622809.
  12. Muhannad Fadhel, Berndl ES, Strohm E and Kolios MC. Ultra-High Frequency Acoustic Impedance Imaging of Cancer Cells, IEEE International Ultrasonics Symposium Proceedings. 2014 pp. 1912-1915. 
  13. Wirtzfeld LA, Berndl ES, Czarnota GJ and Kolios MC. Effective scatterer size estimates in HT- 29 spheroids at 55 MHz and 80 MHz. IEEE International Ultrasonics Symposium Proceedings. 2014 pp. 632-63
  14. Wirtzfeld LA, Berndl ES, Czarnota GJ and Kolios MC. Quantitative ultrasound analyses of cell starvation in HT-29 pellets. IEEE International Ultrasonics Symposium Proceedings. 2014 pp. 620-623.
  15. Hysi E, May JP, Wirtzfeld L, Undzys E, Li SD, and Kolios MC. Longitudinal monitoring of oxygen saturation with photoacoustic imaging: An early, functional indicator of the in vivo efficacy of thermosensitive liposome treatments. IEEE International Ultrasonics Symposium Proceedings. 2014 pp. 357-360.
  16. Hysi E, Dopsa D, Kolios MC. Photoacoustic tissue characterization using envelope statistics and ultrasonic spectral parameters. Proc. of SPIE Vol. 8943, 89432E
  17. Desmond KL, Moosvi F, Stanisz GJ. Mapping of amide, amine, and aliphatic peaks in the CEST spectra of murine xenografts at 7 T. Magn Reson Med. 2014 May;71(5):1841-53. DOI: 10.1002/mrm.24822. PubMed PMID: 23801344.
  18. Bailey C, Moosvi F, Stanisz GJ. Mapping water exchange rates in rat tumor xenografts using the late-stage uptake following bolus injections of contrast agent. Magn Reson Med. 2013 Jun 25. doi: 10.1002/mrm.24847. [Epub ahead of print] PubMed PMID: 23801522.

2013

  1. Kwok SJ, El Kaffas A, Lai P, Al-Mahrouki AA, Lee J, Iradji S, Tran WT, Giles A, Czarnota GJ. Ultrasound-mediated microbubble enhancement of radiation therapy studied using threedimensional high-frequency power Doppler ultrasound. Ultrasound Med Biol. 2013 Nov;39(11):1983-90. DOI:10.1016/j.ultrasmedbio.2013.03.025. PubMed PMID: 23993051.
  2. Sadeghi-Naini A, Papanicolau N, Falou O, Tadayyon H, Lee J, Zubovits J, Sadeghian A, Karshafian R, Al-Mahrouki A, Giles A, Kolios MC, Czarnota GJ. Low-frequency quantitative ultrasound imaging of cell death in vivo. Med Phys. 2013 Aug;40(8):082901. DOI: 10.1118/1.4812683. PubMed PMID: 23927356.
  3. Kim HC, Al-Mahrouki A, Gorjizadeh A, Karshafian R, Czarnota GJ. Effects of biophysical parameters in enhancing radiation responses of prostate tumors with ultrasound-stimulated microbubbles. Ultrasound Med Biol. 2013 Aug;39(8):1376-87. DOI: 10.1016/j.ultrasmedbio.2013.01.012. PubMed PMID: 23643061.
  4. Sadeghi-Naini A, Papanicolau N, Falou O, Zubovits J, Dent R, Verma S, Trudeau M, Boileau JF, Spayne J, Iradji S, Sofroni E, Lee J, Lemon-Wong S, Yaffe M, Kolios MC, Czarnota GJ. Quantitative ultrasound evaluation of tumor cell death response in locally advanced breast cancer patients receiving chemotherapy. Clin Cancer Res. 2013 Apr 15;19(8):2163-74. DOI: 10.1158/1078-0432.CCR-12-2965. PubMed PMID: 23426278.
  5. Falou O, Sadeghi-Naini A, Prematilake S, Sofroni E, Papanicolau N, Iradji S, Jahedmotlagh Z, Lemon-Wong S, Pignol JP, Rakovitch E, Zubovits J, Spayne J, Dent R, Trudeau M, Boileau JF, Wright FC, Yaffe MJ, Czarnota GJ. Evaluation of neoadjuvant chemotherapy response in women with locally advanced breast cancer using ultrasound elastography. Transl Oncol. 2013 Feb;6(1):17-24. PubMed PMID: 23418613. PubMed Central PMCID: PMC3573650.
  6. El Kaffas A, Giles A, Czarnota GJ. Dose-dependent response of tumor vasculature to radiation therapy in combination with Sunitinib depicted by three-dimensional high-frequency power Doppler ultrasound. Angiogenesis. 2013 Apr;16(2):443-54. DOI: 10.1007/s10456-012-9329-2. PubMed PMID: 23314761.
  7. Hysi E, Dopsa D, and Kolios MC. Photoacoustic radio-frequency spectroscopy (PA-RFS): A technique for monitoring absorber size and concentration. 2013 Proc. of SPIE Vol. 8581, 85813W.
  8. El Kaffas A, Bekah D, Rui M, Kumaradas JC, and Kolios MC. Investigating longitudinal changes in the mechanical properties of MCF-7 cells exposed to paclitaxol using particle tracking microrheology. Physics in Medicine and Biology 58 (2013) 923–936.
  9. Pourebrahimi B, Al-Mahrouki AA, Zalev J, Nofiele JT, Czarnota GJ and Kolios MC. Classifying Normal and Abnormal Vascular Tissues using Photoacoustic Signals. Proc. of SPIE Vol. 8581, 858141
  10. Pourebrahimi, Yoon S, Dopsa D, Kolios MC. Improving the Quality of Photoacoustic Images using the Short-Lag Spatial Coherence Imaging Technique. Proc. of SPIE Vol. 8581, 85813Y
  11. Mehrabian H, Chopra R, Martel AL. Calculation of intravascular signal in dynamic contrast enhanced-MRI using adaptive complex independent component analysis. IEEE Trans Med Imaging. 2013 Apr;32(4):699-710. DOI: 10.1109/TMI.2012.2233747. PubMed PMID: 23247848.
  12. Bailey C, Desmond KL, Czarnota GJ, Stanisz GJ. Quantitative magnetization transfer studies of apoptotic cell death. Magn Reson Med. 2011 Jul;66(1):264-9. DOI: 10.1002/mrm.22820. PubMed PMID: 21695728.
  13. Sadeghi-Naini A, Falou O, Tadayyon H, Al-Mahrouki A, Tran W, Papanicolau N, Kolios MC, Czarnota GJ. Conventional frequency ultrasonic biomarkers of cancertreatment response in vivo. Transl Oncol. 2013 Jun 1;6(3):234-43. Print 2013 Jun. PubMed PMID: 23761215; PubMed Central PMCID: PMC3678128.
  14. Strohm EM, Berndl ES, Kolios MC. Probing red blood cell morphology using high-frequency photoacoustics. Biophys J. 2013 Jul 2;105(1):59-67. doi:10.1016/j.bpj.2013.05.037. PubMed PMID: 23823224; PubMed Central PMCID:PMC3699781.
  15. Pop M, Ghugre NR, Ramanan V, Morikawa L, Stanisz G, Dick AJ, Wright GA. Quantification of fibrosis in infarcted swine hearts by ex vivo late gadolinium-enhancement and diffusion-weighted MRI methods. Phys Med Biol. 2013 Aug 7;58(15):5009-28. doi: 10.1088/0031-9155/58/15/5009. Epub 2013 Jul 8. PubMed PMID: 23833042.
  16. Bock NA, Hashim E, Janik R, Konyer NB, Weiss M, Stanisz GJ, Turner R, Geyer S. Optimizing T1-weighted imaging of cortical myelin content at 3.0 T. Neuroimage. 2013 Jan 15;65:1-12. doi: 10.1016/j.neuroimage.2012.09.051. Epub 2012 Oct 1. PubMed PMID: 23036446.

2012

  1. Al-Mahrouki AA, Karshafian R, Giles A, Czarnota GJ. Bioeffects of ultrasound-stimulated microbubbles on endothelial cells: gene expression changes associated with radiation enhancement in vitro. Ultrasound Med Biol. 2012 Nov;38(11):1958-69. DOI: 10.1016/j.ultrasmedbio.2012.07.009. PubMed PMID: 22980406.
  2. Falou O, Soliman H, Sadeghi-Naini A, Iradji S, Lemon-Wong S, Zubovits J, Spayne J, Dent R, Trudeau M, Boileau JF, Wright FC, Yaffe MJ, Czarnota GJ. Diffuse optical spectroscopy evaluation of treatment response in women with locally advanced breast cancer receiving neoadjuvant chemotherapy. Transl Oncol. 2012 Aug;5(4):238-46. PubMed PMID: 22937175. PubMed Central PMCID: PMC3431033.
  3.  Czarnota GJ, Karshafian R, Burns PN, Wong S, Al-Mahrouki A, Lee JW, Caissie A, Tran W, Kim C, Furukawa M, Wong E, Giles A. Tumor radiation response enhancement by acoustical stimulation of the vasculature. Proc Natl Acad Sci USA. 2012 Jul 24;109(30):E2033-41. DOI: 10.1073/pnas.1200053109. PubMed PMID: 22778441. PubMed Central PMCID: PMC3409730.
  4. Lee J, Karshafian R, Papanicolau N, Giles A, Kolios MC, Czarnota GJ. Quantitative ultrasound for the monitoring of novel microbubble and ultrasound radiosensitization. Ultrasound Med Biol. 2012 Jul;38(7):1212-21. DOI: 10.1016/j.ultrasmedbio.2012.01.028. PubMed PMID: 22579547.
  5. El Kaffas A, Tran W, Czarnota GJ. Vascular strategies for enhancing tumor response to radiation therapy. Technol Cancer Res Treat. 2012 Oct;11(5):421-32. PubMed PMID: 22568629.
  6. Dorożyński PP, Kulinowski P, Młynarczyk A, Stanisz GJ. MRI as a tool for evaluation of oral controlled release dosage forms. Drug Discov Today. 2012 Feb;17(3-4):110-23. doi: 10.1016/j.drudis.2011.10.026. Epub 2011 Nov 7. Review.PubMed PMID: 22094243.
  7. Shuhendler AJ, Staruch R, Oakden W, Gordijo CR, Rauth AM, Stanisz GJ, Chopra R, Wu XY. Thermally-triggered ‘off-on-off’ response of gadolinium-hydrogel-lipid hybrid nanoparticles defines a customizable temperature window for non-invasive magnetic resonance imaging thermometry. J Control Release. 2012 Feb 10;157(3):478-84. doi: 10.1016/j.jconrel.2011.09.061. Epub 2011 Sep 10. PubMed PMID: 21939700.
  8. Desmond KL, Stanisz GJ. Understanding quantitative pulsed CEST in the presence of MT. Magn Reson Med. 2012 Apr;67(4):979-90. doi: 10.1002/mrm.23074. Epub 2011 Aug 19. PubMed PMID: 21858864.
  9. Falou O, Sadeghi-Naini A, Soliman H, Yaffe MJ, Czarnota GJ. Diffuse optical imaging for monitoring treatment response in breast cancer patients. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:3155-8. doi: 10.1109/EMBC.2012.6346634. PubMed PMID: 23366595.
  10. Sadeghi-Naini A, Falou O, Czarnota GJ. Quantitative ultrasound spectral parametric maps: early surrogates of cancer treatment response. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:2672-5. doi: 10.1109/EMBC.2012.6346514. PubMed PMID:23366475.
  11. Sadeghi-Naini A, Falou O, Czarnota GJ. Quantitative ultrasound visualization of cell death: emerging clinical applications for detection of cancer treatment response. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:1125-8. doi:10.1109/EMBC.2012.6346133. Review. PubMed PMID: 23366094.
  12. Miller DL, Smith NB, Bailey MR, Czarnota GJ, Hynynen K, Makin IR; Bioeffects Committee of the American Institute of Ultrasound in Medicine. Overview of therapeutic ultrasound applications and safety considerations. J Ultrasound Med. 2012 Apr;31(4):623-34. Review. PubMed PMID: 22441920.
  13. Hysi E, Saha RK, Kolios MC. Photoacoustic ultrasound spectroscopy for assessing red blood cell aggregation and oxygenation. J Biomed Opt. 2012 Dec;17(12):125006. doi: 10.1117/1.JBO.17.12.125006. PubMed PMID: 23235833.
  14. Strohm EM, Gorelikov I, Matsuura N, Kolios MC. Acoustic and photoacoustic characterization of micron-sized perfluorocarbon emulsions. J Biomed Opt. 2012 Sep;17(9):96016-1. doi: 10.1117/1.JBO.17.9.096016. PubMed PMID: 23085917.
  15. Hysi E, Saha RK, Kolios MC. On the use of photoacoustics to detect red blood cell aggregation. Biomed Opt Express. 2012 Sep 1;3(9):2326-38. Epub 2012 Aug 30. PubMed PMID: 23024924; PubMed Central PMCID: PMC3447572.
  16. Falou O, Jafari Sojahrood A, Kumaradas JC, Kolios MC. Surface modes and acoustic scattering of microspheres and ultrasound contrast agents. J Acoust Soc Am. 2012 Sep;132(3):1820-9. doi: 10.1121/1.4740505. PubMed PMID: 22978909.
  17. Austin JW, Kang CE, Baumann MD, DiDiodato L, Satkunendrarajah K, Wilson JR, Stanisz GJ, Shoichet MS, Fehlings MG. The effects of intrathecal injection of a hyaluronan-based hydrogel on inflammation, scarring and neurobehavioural outcomes in a rat model of severe spinal cord injury associated with arachnoiditis. Biomaterials. 2012 Jun;33(18):4555-64. doi: 10.1016/j.biomaterials.2012.03.022. Epub 2012 Mar 27. PubMed PMID: 22459192.3
  18. Chavez S, Stanisz GJ. A novel method for simultaneous 3D B(1) and T(1) mapping: the method of slopes (MoS). NMR Biomed. 2012 Sep;25(9):1043-55. doi:10.1002/nbm.2769. Epub 2012 Feb 26. PubMed PMID: 22368092.
  19. Flint JJ, Hansen B, Portnoy S, Lee CH, King MA, Fey M, Vincent F, Stanisz GJ, Vestergaard-Poulsen P, Blackband SJ. Magnetic resonance microscopy of human and porcine neurons and cellular processes. Neuroimage. 2012 Apr 2;60(2):1404-11. doi: 10.1016/j.neuroimage.2012.01.050. Epub 2012 Jan 14. PubMed PMID: 22281672; PubMed Central PMCID: PMC3304009.

  1. Diffuse Optical Spectroscopy Evaluation of Treatment Response in Women with Locally Advanced Breast Cancer Receiving Neoadjuvant Chemotherapy O. Falou, H. Soliman, A. Sadeghi-Naini, S. Iradji, S. Lemon-Wong, J. Zubovits, J. Spayne, R. Dent, M. Trudeau, J. F. Boileau, F. C. Wright, M. J. Yaffe, and G. J. Czarnota, Translational Oncology, vol. 5, no. 4, pp. 238–246, 2012.
  2. Lymphoepithelioma-like carcinoma of the breast: a diagnostic and therapeutic challenge R. Dinniwell, W. M. Hanna, M. Mashhour, R. S. Saad, and G. J. Czarnota, Current Oncology, vol. 19, no. 3, pp. e177–83, 2012 (2012)
    On the use of photoacoustics to detect red blood cell aggregation Eno Hysi, Ratan K. Saha and Michael C. Kolios, Biomedical Optics Express, Vol. 3, No. 9, Pages 2326-2338 (2012)
  3. Imaging innovations for cancer therapy response monitoring Ali Sadeghi-Naini, Omar Falou, John M Hudson, Colleen Bailey, Peter N Burns, Martin J Yaffe, Greg J Stanisz, Michael C Kolios & Gregory J Czarnota (2012) 
Imaging in Medicine, Voume 4 Number 3, Pages  311-327
  4. Quantitative Ultrasound for the Monitoring of Novel Microbubble and Ultrasound Radiosensitization  Lee J, Karshafian R, Papanicolau N, Giles A, Kolios MC, Czarnota GJ. (2012) 
Ultrasound in Medicine and Biology Volume 38, Issue 7, Pages 1212–1221
  5. Classification of the nonlinear dynamics and bifurcation structure of ultrasound contrast agents excited at higher multiples of their resonance frequency Amin Jafari Sojahrood and Michael C. Kolios (2012) 
Physics Letters A, Volume 376, Issue 33 pp. 2222–2229
  6. Validity of a theoretical model to examine blood oxygenation dependent optoacoustics  Ratan K. Saha, Subhajit Karmakar, Eno Hysi, Madhusudan Roy, and Michael C. Kolios (2012) Journal of Biomedical Optics 17(5), 055002
  7. Feasibility of optical coherence elastography measurements of shear wave propagation in homogeneous tissue equivalent phantoms  Marjan Razani, Adrian Mariampillai, Cuiru Sun, Timothy W. H. Luk, Victor X. D. Yang, and Michael C. Kolios (2012)
    Biomedical Optics Express, Vol. 3, Issue 5, pp. 972-980

2011

  1. Effects of erythrocyte oxygenation on optoacoustic signals Ratan K. Saha and Michael C. Kolios (2011), Journal of Biomedical Optics 16, 115003; doi:10.1117/1.3655355
  2. Detecting apoptosis using dynamic light scattering with optical coherence tomography Golnaz Farhat, Adrian Mariampillai, Victor X. D. Yang, Gregory J. Czarnota and Michael C. Kolios (2011), Journal of Biomedical Optics 16, 070505 (Jul 18, 2011); doi:10.1117/1.3600770
  3. Effects of Cell Spatial Organization and Size Distribution on Ultrasound Backscattering  Ratan K. Saha and Michael C. Kolios (2011) IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol.58(10)  2118-2131
  4. A simulation study on photoacoustic signals from red blood cells   Ratan K. Saha and Michael C. Kolios (2011) The Journal of the Acoustical Society of America 129 (5)  – 2935–2943
  5. Vaporization of perfluorocarbon droplets using optical irradiation   Eric Strohm, Min Rui, Ivan Gorelikov, Naomi Matsuura, and Michael Kolios (2011) Biomedical Optics Express, Vol. 2, Issue 6, pp. 1432-1442
  6. Detecting cell death with optical coherence tomography and envelope statistics    Golnaz Farhat, Victor X. D. Yang, Gregory J. Czarnota and Michael C. Kolios (2011) Journal of Biomedical Optics 16(2) – 026017
  7. Hybrid Quantum Dot−Fatty Ester Stealth Nanoparticles: Toward Clinically Relevant in Vivo Optical Imaging of Deep TissueAdam J. Shuhendler, Preethy Prasad, Ho-Ka Carol Cha†, Claudia R. Gordijo, Behrouz Soroushian, Michael Kolios, Kui Yu, Peter J. O’Brien, Andrew Michael Rauth, and Xiao Yu Wu (2011) ACS Nano 5(3) – 1958-1966

2010

  1. Vlad RM, Kolios MC, Moseley JL, Czarnota GJ, Brock KK. Evaluating the extent of cell death in 3D high frequency ultrasound by registration with whole-mount tumor histopathology. Med Phys. 2010 Aug;37(8):4288-97. PubMed PMID: 20879589.
  2. Vlad RM, Saha RK, Alajez NM, Ranieri S, Czarnota GJ, Kolios MC. An increase in cellular size variance contributes to the increase in ultrasound backscatter during cell death. Ultrasound Med Biol. 2010 Sep;36(9):1546-58. DOI: 10.1016/j.ultrasmedbio.2010.05.025. PubMed PMID: 20800181.
  3. Park JI, Jagadeesan D, Williams R, Oakden W, Chung S, Stanisz GJ, Kumacheva E. Microbubbles loaded with nanoparticles: a route to multiple imaging modalities. ACS Nano. 2010 Nov 23;4(11):6579-86. doi: 10.1021/nn102248g. Epub 2010 Oct 18. PubMed PMID: 20968309.

  1. Quantitative measurements of apoptotic cell properties using acoustic microscopy E. Strohm, G. J. Czarnota, and M. C. Kolios, IEEE transactions on ultrasonics, ferroelectrics, and frequency control, vol. 57, no. 10, pp. 2293–304, Oct. 2010.
  2. An increase in cellular size variance contributes to the increase in ultrasound backscatter during cell death R. M. Vlad, R. K. Saha, N. M. Alajez, S. Ranieri, G. J. Czarnota, and M. C. Kolios, Ultrasound in medicine & biology, vol. 36, no. 9, pp. 1546–58, Sep. 2010.
  3. Functional imaging using diffuse optical spectroscopy of neoadjuvant chemotherapy response in women with locally advanced breast cancer H. Soliman, A. Gunasekara, M. Rycroft, J. Zubovits, R. Dent, J. Spayne, M. J. Yaffe, and G. J. Czarnota, Clinical cancer research : an official journal of the American Association for Cancer Research, vol. 16, no. 9, pp. 2605–14, May 2010.
  4. Imaging breast cancer chemotherapy response with light: Commentary on Soliman et al. B. J. Tromberg and A. E. Cerussi, Clinical cancer research : an official journal of the American Association for Cancer Research, vol. 16, no. 9, pp. 2486–8, May 2010.
  5. Ultrasound detection of cell death G. J. Czarnota and M. C. Kolios, Imaging in Medicine, vol. 2, no. 1, pp. 17–28, Feb. 2010.
  6. Study of laser-induced thermoelastic deformation of native and coagulated ex-vivo bovine liver tissues for estimating their optical and thermomechanical properties Behrouz Soroushian, William M. Whelan, Michael C. Kolios (2010)
    Journal of Biomedical Optics 15(6) – 065002
  7. Quantitative Measurements of Apoptotic Cell Properties Using Acoustic Microscopy   Eric M. Strohm, Gregory J. Czarnota, and Michael C. Kolios (2010), IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 57, no. 10
  8.  An increase in cellular size variance contributes to the increase in ultrasound backscatter during cell death    Roxana M. Vlad, Ratan K Saha, Nehad M. Alajez, Shawn Ranieri, Gregory J. Czarnota and Michael C. Kolios (2010), Ultrasound in Medicine and Biology 36 (9) 1546-1558
  9. The measurement of ultrasound scattering from individual micron-sized objects and its application in single cell scattering   Omar Falou, Min Rui, Ahmed El Kaffas,  J. Carl Kumaradas and Michael C. Kolios (2010), The Journal of the Acoustical Society of America 128 (2) 894–902
  10. Evaluating the extent of cell death in 3D high frequency ultrasound by registration with whole-mount tumor histopathologyRoxana M. Vlad, Michael C. Kolios, Joanne L. Moseley, Gregory J. Czarnota, Kristy K. Brock (2010)
    Medical Physics 37 (8) 4288-4297
  11. Single cell size estimation from backscattered spectrum by using some weak acoustic scattering approximationsRatan K Saha, Subodh K Sharma and Michael C Kolios (2010) Canadian Acoustics / Acoustique canadienne 38 (2) 31-34
  12. Ultrasound detection of cell deathGregory J. Czarnota and Michael C. Kolios (2010) Imaging in Medicine 2(1) 17-28

2009

  1. Bailey C, Giles A, Czarnota GJ, Stanisz GJ. Detection of apoptotic cell death in vitro in the presence of Gd-DTPA-BMA. Magn Reson Med. 2009 Jul;62(1):46-55. doi: 10.1002/mrm.21972. PubMed PMID: 19253383.
  2. Dinniwell R, Chan P, Czarnota G, Haider MA, Jhaveri K, Jewett M, Fyles A, Jaffray D, Milosevic M. Pelvic lymph node topography for radiotherapy treatment planning from ferumoxtran-10 contrast-enhanced magnetic resonance imaging. Int J Radiat Oncol Biol Phys. 2009 Jul 1;74(3):844-51. doi:10.1016/j.ijrobp.2008.09.026. Epub 2008 Dec 25. PubMed PMID: 19095369.
  3. Strohm EM, Kolios MC. Measuring the mechanical properties of cells using acoustic microscopy. Conf Proc IEEE Eng Med Biol Soc. 2009;2009:6042-5. doi:10.1109/IEMBS.2009.5334535. PubMed PMID: 19964888.
  4. Bost W, Stracke F, Weiss EC, Narasimhan S, Kolios MC, Lemor R. High frequency optoacoustic microscopy. Conf Proc IEEE Eng Med Biol Soc. 2009;2009:5883-6. doi:10.1109/IEMBS.2009.5334452. PubMed PMID: 19964880.
  5. Smith SA, Golay X, Fatemi A, Mahmood A, Raymond GV, Moser HW, van Zijl PC, Stanisz GJ. Quantitative magnetization transfer characteristics of the human cervical spinal cord in vivo: application to adrenomyeloneuropathy. Magn Reson Med. 2009 Jan;61(1):22-7. doi: 10.1002/mrm.21827. PubMed PMID: 19097204; PubMed Central PMCID: PMC2632947.
  6. Shepherd TM, Thelwall PE, Stanisz GJ, Blackband SJ. Aldehyde fixative solutions alter the water relaxation and diffusion properties of nervous tissue. Magn Reson Med. 2009 Jul;62(1):26-34. doi: 10.1002/mrm.21977. PubMed PMID: 19353660; PubMed Central PMCID: PMC3188415.
  7. Shepherd TM, Flint JJ, Thelwall PE, Stanisz GJ, Mareci TH, Yachnis AT, Blackband SJ. Postmortem interval alters the water relaxation and diffusion properties of rat nervous tissue–implications for MRI studies of human autopsy samples. Neuroimage. 2009 Feb 1;44(3):820-6. doi: 10.1016/j.neuroimage.2008.09.054. Epub 2008 Oct 19. PubMed PMID: 18996206; PubMed Central PMCID: PMC2836859.

  1. Potential use of ultrasound for the detection of cell changes in cancer treatment   Michael C. Kolios and Gregory J. Czarnota (2009)
    Future Oncology 5(10) 1527-1532
  2. Quantitative Ultrasound Characterization of Responses to Radiotherapy in Cancer Mouse Models    Vlad RM, Brand S, Giles A, Kolios MC, Czarnota GJ. (2009) Clincal Cancer Research 15(6):2067-75
  3. Monitoring of cell death in epithelial cells using high frequency ultrasound spectroscopy   Brand S, Solanki B, Foster DB, Czarnota GJ, Kolios MC. (2009) Ultrasound in Medicine and Biology 35(3):482-93

2008

  1. Banihashemi B, Vlad R, Debeljevic B, Giles A, Kolios MC, Czarnota GJ. Ultrasound imaging of apoptosis in tumor response: novel preclinical monitoring of photodynamic therapy effects. Cancer Res. 2008 Oct 15;68(20):8590-6. doi:10.1158/0008-5472.CAN-08-0006. PubMed PMID: 18922935.
  1. Yu WR, Baptiste DC, Liu T, Odrobina E, Stanisz GJ, Fehlings MG. Molecular mechanisms of spinal cord dysfunction and cell death in the spinal hyperostotic mouse: implications for the pathophysiology of human cervical spondylotic myelopathy. Neurobiol Dis. 2009 Feb;33(2):149-63. doi: 10.1016/j.nbd.2008.09.024. Epub 2008 Oct 18. PubMed PMID: 19006686.
  1. Buckley DL, Kershaw LE, Stanisz GJ. Cellular-interstitial water exchange and its effect on the determination of contrast agent concentration in vivo: dynamic contrast-enhanced MRI of human internal obturator muscle. Magn Reson Med. 2008 Nov;60(5):1011-9. doi: 10.1002/mrm.21748. PubMed PMID: 18956419.

  1. Quantitative Ultrasound Characterization of Cancer Radiotherapy Effects In Vitro Roxana M. Vlad, Nehad M. Alajez, Anoja Giles, Michael C. Kolios, Gregory J. Czarnota (2008) International Journal of Radiation Oncology Biology Physics, 72 (4): 1236-1243
  2. A study of high frequency ultrasound scattering from non-nucleated biological specimens  Omar Falou, Ralph E. Baddour, George Nathanael, Gregory J. Czarnota, J. Carl Kumaradas and Michael C. Kolios (2008), The Journal of the Acoustical Society of America 124(5): EL278-EL283
  3. Detecting the Effects of Photodynamic Therapy in vivo by High Frequency Ultrasound Spectroscopy: a Novel Way of Monitoring Tumour Response  Behzad Banihashemi, Roxana Vlad, Bane Debeljevic, Anoja Giles, Michael C. Kolios, Gregory J. Czarnota (2008)
    Cancer Research 68(20): 8590-8596
  4. High frequency ultrasound tissue characterization and acoustic microscopy of intracellular changes Sebastian Brand, Weiss EC, Lemor RM, and Kolios M.C. (2008), Ultrasound in Medicine and Biology 34(9): 1396-1407

2007

  1. Portnoy S, Stanisz GJ. Modeling pulsed magnetization transfer. Magn Reson Med. 2007 Jul;58(1):144-55. PubMed PMID: 17659607.

  1. Parametric analysis of ultrasound backscatter signals for monitoring cancer cell structural changes during cancer treatment  Harshitha Nallapareddy, Sridhar Krishnan and Michael Kolios (2007) Canadian Acoustics 35(2): 47-54
  2. High-Frequency Ultrasound Assessment of Antimicrobial Photodynamic Therapy In Vitro Ralph E. Baddour, Farhan N. Dadani, Michael C. Kolios and Stuart K. Bisland (2007) Journal of Biological Physics 33:61–66
  3. Ultrasonic Characterization of Whole Cells and Isolated Nuclei,   Linda Taggart, Ralph E. Baddour, Anoja Giles, Gregory J. Czarnota and Michael C. Kolios (2007) Ultrasound in Medicine and Biology 33 (3): 389-401
  4. Wide dynamic range detection of bidirectional flow in Doppler optical coherence tomography using a two-dimensional Kasai estimator  Darren Morofke, Michael C. Kolios, I. Alex Vitkin and Victor X. D. Yang (2007) Optics Letters 32 (3): 253-255
  5. The fluid and elastic nature of nucleated cells: Implications from the cellular backscatter response  Ralph E. Baddour and Michael C. Kolios (2007), JASA Express Letters 121 (1): 16-22

2006

  1. Thelwall PE, Shepherd TM, Stanisz GJ, Blackband SJ. Effects of temperature and aldehyde fixation on tissue water diffusion properties, studied in an erythrocyte ghost tissue model. Magn Reson Med. 2006 Aug;56(2):282-9. PubMed PMID: 16841346.
  1. Bower JA, Stanisz GJ, Keir PJ. An MRI evaluation of carpal tunnel dimensions in healthy wrists: Implications for carpal tunnel syndrome. Clin Biomech (Bristol, Avon). 2006 Oct;21(8):816-25. Epub 2006 Jul 11. PubMed PMID: 16814908.

  1. An Investigation of the Use of Transmission Ultrasound to Measure Acoustic Attenuation Changes in Thermal Therapy Parmar N. and Kolios M.C. (2006) Medical and Biological Engineering and Computing 44:583-591

2005

  1. Taggart LR, Baddour RE, Giles A, Czarnota GJ, Kolios MC. Ultrasonic characterization of whole cells and isolated nuclei. Ultrasound Med Biol. 2007 Mar;33(3):389-401. PubMed PMID: 17257739.
  2. Shepherd TM, Scheffler B, King MA, Stanisz GJ, Steindler DA, Blackband SJ. MR microscopy of rat hippocampal slice cultures: a novel model for studying cellular processes and chronic perturbations to tissue microstructure. Neuroimage. 2006 Apr 15;30(3):780-6. Epub 2005 Dec 1. PubMed PMID: 16325430.
  3. Stanisz GJ, Odrobina EE, Pun J, Escaravage M, Graham SJ, Bronskill MJ, Henkelman RM. T1, T2 relaxation and magnetization transfer in tissue at 3T. Magn Reson Med. 2005 Sep;54(3):507-12. PubMed PMID: 16086319.
  4. Pun TW, Odrobina E, Xu QG, Lam TY, Munro CA, Midha R, Stanisz GJ. Histological and magnetic resonance analysis of sciatic nerves in the tellurium model of neuropathy. J Peripher Nerv Syst. 2005 Mar;10(1):38-46. PubMed PMID:15703017.
  5. Odrobina EE, Lam TY, Pun T, Midha R, Stanisz GJ. MR properties of excised neural tissue following experimentally induced demyelination. NMR Biomed. 2005 Aug;18(5):277-84. PubMed PMID: 15948233

  1. Monitoring Structural Changes in Cells with High Frequency Ultrasound Signal Statistics   A.S. Tunis G.J. Czarnota, A. Giles, M.D. Sherar, J.W. Hunt and M.C. Kolios (2005) , Ultrasound in Medicine and Biology 31(8), 1041-10
  2. High-frequency ultrasound scattering from microspheres and single cells  R. E. Baddour, M. D. Sherar, J. W. Hunt, G. J. Czarnota, M. C. Kolios (2005), Journal of  the Acoustical Society of  America, 117(2), 934-943
  3. High-frequency ultrasound for monitoring changes in liver tissue during preservation  Roxana M. Vlad, Gregory J. Czarnota, Anoja Giles, Michael D. Sherar, John W. Hunt, Michael C. Kolios (2005), Physics in Medicine and Biology, 50(2) 197-213
  4. Role of ultrasound in the detection of apoptosis G. J. Czarnota, European journal of nuclear medicine and molecular imaging, vol. 32, no. 5, p. 622, May 2005.

2004

  1. Stanisz GJ, Webb S, Munro CA, Pun T, Midha R. MR properties of excised neural tissue following experimentally induced inflammation. Magn Reson Med. 2004 Mar;51(3):473-9. PubMed PMID: 15004787.

2003

  1. Thelwall PE, Grant SC, Stanisz GJ, Blackband SJ. Human erythrocyte ghosts: exploring the origins of multiexponential water diffusion in a model biological tissue with magnetic resonance. Magn Reson Med. 2002 Oct;48(4):649-57. PubMed PMID: 12353282.
  2. Stanisz GJ, Yoon RS, Joy ML, Henkelman RM. Why does MTR change with neuronal depolarization? Magn Reson Med. 2002 Mar;47(3):472-5. PubMed PMID: 11870833.

  1. Webb S, Munro CA, Midha R, Stanisz GJ. Is multicomponent T2 a good measure of myelin content in peripheral nerve? Magn Reson Med. 2003 Apr;49(4):638-45. PubMed PMID: 12652534.

  1. Changes in dielectric properties at 460 kHz of kidney and fat during heating: importance for radio-frequency thermal therapy Mihaela Pop, Andrea Molckovsky, Lee Chin, Michael C Kolios, Michael A S Jewett and Michael D Sherar (2003) Physics in Medicine and Biology 48, 2509-2525

2002

  1. Ultrasonic spectral parameter imaging of apoptosis   Kolios M.C., Czarnota G.J., Lee M. , Hunt J.W. and Sherar M.D. (2002). Ultrasound in Medicine and Biology 28(5), 589-597
  2. A model based upon pseudo-regular spacing of cells combined with the randomization of nuclei can explain the significant changes in high-frequency ultrasound during apoptosis Hunt J.W., Worthington A., Xuan A., Kolios M.C., Czarnota G.J. and Sherar M.D. (2002) Ultrasound in Medicine and Biology 28(2), 217-226

2000

  1. Comparison of thermal damage calculated using magnetic resonance thermometry with magnetic resonance imaging post treatment and histology after interstitial microwave thermal therapy of rabbit brain M. D Sherar, J. A. Moriarty, M.C. Kolios, J.C. Chen, R.D. Peters, L.C. Ang, R.S. Hinks, R.M. Henkelman, M.J. Bronskill, W. Kucharczyk (2000) Physics in Medicine and Biology 45, 3563-3576.
  2. The Effects of Dynamic Optical Properties During Interstitial Laser PhotocoagulationIizuka M.N., Vitkin A.I., Kolios M.C., Sherar M.D. (2000)
    Physics in Medicine and Biology 45, 1335-1357

1999

  1. Ultrasound imaging of apoptosis: high-resolution non-invasive imaging of programmed cell death in vitro, in situ and in vivo Czarnota G.J., Kolios M.C., Abraham J., Portnoy M., Ottensmeyer F.P., Hunt, J.W. and Sherar M.D.British journal of cancer, vol. 81, no. 3, pp. 520–527, (1999)
  2. An investigation of the flow dependence of temperature gradients near large vessel during steady state and transient tissue heating Kolios M.C., Worthington A.E., Holdsworth D.W., Sherar M.D. and Hunt J.W. (1999) Physics in Medicine and Biology 44(6), 1479-1497

1998

  1. A Theoretical Comparison of Energy Sources: Microwave, Ultrasound and Laser, for Interstitial Thermal Therapy Skinner M., Iizuka M., Kolios M.C. and Sherar M.D. (1998) Physics in Medicine and Biology 43(12), 3535-3547
  2. Experimental evaluation of two simple thermal models using transient temperature analysis Kolios M.C., Worthington A. E., Sherar M.D. and Hunt J.W. (1998) Physics in Medicine and Biology 43(11), 3325-3340

1997

  1. Ultrasonic biomicroscopy of viable, dead and apoptotic cells Czarnota G.J.* , Kolios M.C.* , Vaziri H.* , Benchimol S., Ottensmeyer F.P., Sherar M.D. and Hunt J.W. (1997) Ultrasound in Medicine and Biology 23(6), 961-965 * authors have made equal contribution
    Magnetic resonance imaging of temperature changes during interstitial microwave heating: a phantom study Vitkin I.A., Moriarty J.A., Peters R.D., Kolios M.C., Gladman A.S., Chen J.C., Hinks R.S., Hunt J.W., Wilson B.C., Easty A.T., Bronskill M.J., Kucharczyk W., Sherar M.D. and Henkelman R.M. (1997) Medical Physics 24, 269-277
  2. Three-dimensional Structure of Myelin Basic Protein D. R. Beniac, M. D. Luckevich, G. J. Czarnota, T. A. Tompkins, R. A. Ridsdale, F. P. Ottensmeyer, M. A. Moscarello, and G. Harauz, vol. 272, no. 7, pp. 4261–4268, 1997.
  3. High Resolution Microanalysis and Three-Dimensional Nucleosome Structure Associated with Transcribing Chromatin G. J. Czarnota, D. P. Bazett-Jones, E. Mendez, V. G. Allfrey, and F. P. Ottensmeyer, Micron, vol. 28, no. 419–431, p. 1997, 1997.

1996

  1. Blood flow cooling and ultrasonic lesion formation Kolios M.C., Sherar M.D. and Hunt J.W. (1996) Medical Physics 23(7), 1287-98
  2. Structural states of the nucleosome G. J. Czarnota and F. P. Ottensmeyer, The Journal of biological chemistry, vol. 271, no. 7, pp. 3677–83, Feb. 1996.
  3. Visualization and analysis of unfolded nucleosomes associated with transcribing chromatin D. P. Bazett-Jones, E. Mendez, G. J. Czarnota, F. P. Ottensmeyer, and V. G. Allfrey, Nucleic acids research, vol. 24, no. 2, pp. 321–9, Jan. 1996.

1995

  1. Large vessel cooling in heated tissues: a numerical study Kolios M.C., Sherar M.D. and Hunt J.W. (1995) Physics in Medicine and Biology 40, 1-18
  2. A Structure for the Signal Sequence Binding Protein SRP54: 3D Reconstruction from STEM Images of Single Molecules G. J. Czarnota, D. W. Andrews, N. A. Farrow, and F. P. Ottensmeyer, “” Journal of Structural Biology, vol. 113, pp. 35–46, 1994.

1992

  1. Influence of transition rates and scan rate on kinetic simulations of differential scanning calorimetry profiles of reversible and irreversible protein denaturation Lepock J.R., Ritchie K.P., Kolios M.C., Rodahl A.M., Heinz K.A., and Kruuv J. (1992)
    Biochemistry 31(50), 12706-12

Book Chapters

Conference Papers ( Peer Reviewed )

Conference Papers ( Non Peer Reviewed )

2011

2011

  1. Farhat G, Yang VX, Czarnota GJ, Kolios MC. Detecting cell death with optical coherence tomography and envelope statistics. J Biomed Opt. 2011 Feb;16(2):026017. DOI: 10.1117/1.3544543. PubMed PMID: 21361701.
  2. Farhat G, Mariampillai A, Yang VX, Czarnota GJ, Kolios MC. Detecting apoptosis using dynamic light scattering with optical coherence tomography. J Biomed Opt. 2011 Jul;16(7):070505. DOI: 10.1117/1.3600770. PubMed PMID: 21806246.
  3. Bailey C, Desmond KL, Czarnota GJ, Stanisz GJ. Quantitative magnetization transfer studies of apoptotic cell death. Magn Reson Med. 2011 Jul;66(1):264-9. doi: 10.1002/mrm.22820. Epub 2011 Feb 17. PubMed PMID: 21695728.

Posters ( Non Peer Reviewed )